karel-brinda / PhylignLinks
Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
β35Updated last year
Alternatives and similar repositories for Phylign
Users that are interested in Phylign are comparing it to the libraries listed below
Sorting:
- Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ]β36Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.β51Updated 2 months ago
- Code to create a PRG from a Multiple Sequence Alignment fileβ25Updated last week
- Genome size estimation from long read overlapsβ57Updated 2 months ago
- Fast and space-efficient taxonomic classification of long readsβ43Updated last month
- Automated strain separation of low-complexity metagenomesβ51Updated 3 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenomeβ30Updated last month
- A new high-resolution long-read metagenome assembler for even noisy readsβ69Updated 3 weeks ago
- Recombination-free treesβ58Updated 3 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.β22Updated 3 months ago
- Colinear block visualisation toolβ31Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.β25Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.β45Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCAβ36Updated 3 months ago
- Remove human reads from a sequencing runβ40Updated 8 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignmentβ59Updated last week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketchesβ45Updated 2 months ago
- Microbial agile accurate SNP Typerβ29Updated last year
- Plasmid analysis using rearrangement distancesβ42Updated 3 weeks ago
- Gene-flank analysis toolβ27Updated 6 months ago
- Get microbial sequence data easier and fasterβ28Updated 5 years ago
- frame-shift correction for long-read (meta)genomicsβ33Updated last year
- Bacterial GWAS analysisβ40Updated 3 weeks ago
- β16Updated this week
- PanTax: Strain-level metagenomic profiling using pangenome graphsβ39Updated last week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and meβ¦β23Updated 2 years ago
- Differential k-mer analysisβ36Updated last year
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasetsβ24Updated 3 weeks ago
- β23Updated 4 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.β27Updated last month