Rapid estimation of phylogenetic trees using sketching
☆13Feb 18, 2025Updated last year
Alternatives and similar repositories for attotree
Users that are interested in attotree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆42Apr 17, 2024Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated last year
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆49Jun 19, 2026Updated 3 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- ☆16Jun 30, 2021Updated 5 years ago
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated last month
- k-mers and the like☆22Oct 4, 2026Updated 2 weeks ago
- De novo genome assembly for long reads using an overlap graph☆25Oct 5, 2026Updated last week
- Index kmtricks bf matrices☆49Oct 6, 2026Updated last week
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated last year
- BWT construction and search☆132Aug 30, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast sequence distance estimates☆34Updated this week
- Uses cDBG to count unitigs in bacterial populations☆20Feb 15, 2023Updated 3 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57May 29, 2024Updated 2 years ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 2 months ago
- Recombination-free trees☆75Jul 24, 2026Updated 2 months ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆38Oct 1, 2026Updated 2 weeks ago
- C implementation of the Landau-Vishkin algorithm☆36Apr 8, 2022Updated 4 years ago
- Code for building and testing variant ranking strategies☆18Apr 13, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Variant call verification☆19May 12, 2025Updated last year
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 8 months ago
- BeerDeCoded first results using ITS☆19Oct 8, 2017Updated 9 years ago
- Minimum plain text representation of kmer sets☆20Jan 30, 2025Updated last year
- Bifrost graph gene caller.☆102Aug 31, 2026Updated last month
- compacted de Bruijn graph construction in low memory☆102Nov 4, 2025Updated 11 months ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 5 months ago
- Split k-mer analysis – version 2☆106Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- LMS algorithm for computing edit distance with SIMD optimizations☆11Mar 25, 2024Updated 2 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Oct 1, 2026Updated 2 weeks ago
- Open Human Genome Library☆70Dec 22, 2025Updated 9 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆22Nov 24, 2024Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆38Apr 26, 2026Updated 5 months ago