Data and analysis for NA12878 genome on nanopore
☆410Nov 22, 2022Updated 3 years ago
Alternatives and similar repositories for NA12878
Users that are interested in NA12878 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- Signal-level algorithms for MinION data☆600Aug 5, 2023Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,221May 19, 2026Updated 2 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 4 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆124Sep 10, 2018Updated 7 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- Nanopore sequence read simulator☆308Mar 12, 2026Updated 4 months ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Structural variation caller using third generation sequencing☆673Jul 20, 2026Updated last week
- A PyTorch Basecaller for Oxford Nanopore Reads☆436Feb 20, 2026Updated 5 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Mar 19, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- adapter trimmer for Oxford Nanopore reads☆385May 8, 2024Updated 2 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆299May 9, 2024Updated 2 years ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆167Jul 17, 2026Updated last week
- RNA modifications detection from Nanopore dRNA-Seq data☆88Jun 20, 2026Updated last month
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- Quality control for MinION sequencing data☆221Mar 17, 2026Updated 4 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Methylation/modified base calling separated from basecalling.☆188Sep 17, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python client library for Guppy☆32Aug 15, 2022Updated 3 years ago
- SV caller for nanopore data☆92Jun 7, 2020Updated 6 years ago
- PEPPER-Margin-DeepVariant☆259Jan 12, 2024Updated 2 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆183Jul 30, 2019Updated 6 years ago
- Very fast ONT basecaller☆52Jun 17, 2022Updated 4 years ago
- Research release basecalling models and configurations☆120May 20, 2026Updated 2 months ago
- A single molecule sequence assembler for genomes large and small.☆704Jun 18, 2026Updated last month
- Plotting scripts for long read sequencing data☆557Jun 15, 2026Updated last month
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆356Jul 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 3 years ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆270Nov 30, 2023Updated 2 years ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 4 years ago
- ☆290Dec 29, 2025Updated 7 months ago
- Global alignment and alignment extension☆143Jun 27, 2023Updated 3 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Oct 6, 2015Updated 10 years ago