nanopore-wgs-consortium / NA12878
Data and analysis for NA12878 genome on nanopore
☆375Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for NA12878
- Sequence correction provided by ONT Research☆423Updated last month
- A comparison of different Oxford Nanopore basecallers☆314Updated 5 years ago
- Mummer alignment tool☆466Updated this week
- Genome assembly evaluation tool☆409Updated last week
- adapter trimmer for Oxford Nanopore reads☆340Updated 6 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆341Updated 2 years ago
- Structural variation caller using third generation sequencing☆561Updated last week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆444Updated 3 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆789Updated 2 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆213Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆548Updated last month
- ☆220Updated 5 months ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆307Updated 11 months ago
- Count bases in BAM/CRAM files☆305Updated 2 years ago
- Plotting scripts for long read sequencing data☆435Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆364Updated last week
- Official home of genome aligner based upon notion of Cactus graphs☆526Updated this week
- the pangenome graph builder☆395Updated this week
- Tools for fast and flexible genome assembly scaffolding and improvement☆473Updated 9 months ago
- Fast and accurate de novo assembler for long reads☆369Updated 6 months ago
- A single molecule sequence assembler for genomes large and small.☆660Updated this week
- Reads simulator☆263Updated 3 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆293Updated 3 months ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆231Updated last year
- TransDecoder source☆276Updated last month
- Eukaryotic Genome Annotation Pipeline☆322Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆271Updated 6 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆301Updated 5 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Updated 2 years ago
- Transcript assembly and quantification for RNA-Seq☆384Updated this week