nanopore-wgs-consortium / NA12878
Data and analysis for NA12878 genome on nanopore
☆376Updated 2 years ago
Alternatives and similar repositories for NA12878:
Users that are interested in NA12878 are comparing it to the libraries listed below
- Structural variation caller using third generation sequencing☆573Updated this week
- Sequence correction provided by ONT Research☆433Updated 3 months ago
- A comparison of different Oxford Nanopore basecallers☆315Updated 5 years ago
- adapter trimmer for Oxford Nanopore reads☆348Updated 8 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆567Updated 3 weeks ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆295Updated 10 months ago
- Mummer alignment tool☆477Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆297Updated 5 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆345Updated 2 years ago
- Fast and frugal disk based k-mer counter☆281Updated last month
- Fast and accurate de novo assembler for long reads☆376Updated 8 months ago
- Genome assembly evaluation tool☆416Updated 2 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆374Updated 3 weeks ago
- Count bases in BAM/CRAM files☆309Updated 2 years ago
- ☆227Updated 7 months ago
- Eukaryotic Genome Annotation Pipeline☆329Updated this week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆454Updated this week
- An accurate GFF3/GTF lift over pipeline☆454Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆325Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆802Updated 4 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆215Updated 3 years ago
- Classifier for metagenomic sequences☆253Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆485Updated 11 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆306Updated 7 months ago
- Toolset for SV simulation, comparison and filtering☆366Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆309Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆276Updated 8 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆356Updated 4 months ago
- ☆261Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆535Updated 6 months ago