lh3 / minigffLinks
Parsing and evaluating gene annotation and spliced alignment
☆29Updated 5 months ago
Alternatives and similar repositories for minigff
Users that are interested in minigff are comparing it to the libraries listed below
Sorting:
- ☆12Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆35Updated this week
- ☆19Updated last year
- Population-wide Deletion Calling☆35Updated 9 months ago
- a lexicographically-based GTF/GFF sorter☆37Updated 8 months ago
- Easy genomic regions for short-read variant calling☆45Updated 4 months ago
- ☆45Updated last month
- Long-read splice alignment with high accuracy☆64Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆35Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆85Updated last month
- ☆83Updated 10 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 5 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- ☆21Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago