lh3 / minigffLinks
Parsing and evaluating gene annotation and spliced alignment
☆26Updated 2 months ago
Alternatives and similar repositories for minigff
Users that are interested in minigff are comparing it to the libraries listed below
Sorting:
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- ☆45Updated 2 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated last month
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆74Updated 2 weeks ago
- a lexicographically-based GTF/GFF sorter☆36Updated 5 months ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- Easy genomic regions for short-read variant calling☆44Updated 3 weeks ago
- ☆18Updated last year
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated last week
- ☆21Updated 7 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated 10 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆35Updated 5 months ago
- CAncer Standards Long-read Evaluation☆28Updated 7 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 weeks ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 11 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated last month
- Dot: An interactive dot plot viewer for comparative genomics☆34Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 months ago