Parsing and evaluating gene annotation and spliced alignment
☆29Jul 22, 2025Updated 7 months ago
Alternatives and similar repositories for minigff
Users that are interested in minigff are comparing it to the libraries listed below
Sorting:
- A high-performance BigWig and BigBed library in Rust☆112Feb 13, 2026Updated 2 weeks ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- De novo clustering of long transcript reads into genes☆19Dec 15, 2025Updated 2 months ago
- ☆18Dec 26, 2025Updated 2 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Plot ideogams and simple gene tracks with matplotlib☆21Jan 20, 2026Updated last month
- Efficient querying of biological databases☆42Oct 27, 2025Updated 4 months ago
- ☆19Apr 15, 2024Updated last year
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆86Jan 28, 2026Updated last month
- Phased assembly variant caller☆134Dec 4, 2024Updated last year
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- Tools for describing and manipulating demographic models.☆19May 18, 2025Updated 9 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Jan 6, 2026Updated last month
- Eukaryotic genome annotation software.☆22Feb 13, 2026Updated 2 weeks ago
- expressions on VCFs☆91Apr 19, 2025Updated 10 months ago
- Snakemake pipeline to analyze transposable element 'omics data.☆31Feb 12, 2026Updated 3 weeks ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆145Updated this week
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Streaming assembly for MinION data☆25Dec 16, 2023Updated 2 years ago
- Genome size estimation from long read overlaps☆81Updated this week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆122Feb 24, 2026Updated last week
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Ultra-fast preprocessing and quality control for long-read sequencing data☆221Sep 6, 2025Updated 5 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆110Updated this week
- Multi-sample transcriptome assembly from RNA-Seq☆25Jun 10, 2018Updated 7 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆145Nov 24, 2025Updated 3 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆39Updated this week
- The Simple Fool's Guide to population genomics using RNA-Seq☆28Jul 8, 2016Updated 9 years ago
- WinPCA. A package for windowed principal component analysis.☆46Feb 26, 2026Updated last week
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated last week
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆73Feb 19, 2019Updated 7 years ago
- A genome diagram generator for microbes and organelles☆57Updated this week
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆205Jul 5, 2025Updated 8 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆35Jul 21, 2025Updated 7 months ago
- Full-length transcriptome splicing and mutation analysis☆86Jun 24, 2024Updated last year
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year