Eukaryotic genome annotation software.
☆37Oct 25, 2026Updated last week
Alternatives and similar repositories for funannotate2
Users that are interested in funannotate2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated last year
- Repository for discussion lectures (MCBL121, Winter 2024), up until I decided that google slides was way easier.☆25Dec 17, 2024Updated last year
- Eukaryotic Genome Annotation Pipeline☆402Updated this week
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆26May 8, 2024Updated 2 years ago
- An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.☆25Oct 26, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆25May 21, 2026Updated 5 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 4 months ago
- Automatic Assembly For The Fungi☆29Updated this week
- Homology-based ANI estimation at unprecedented scales🦀☆25Oct 4, 2026Updated last month
- Build, verify, and scale bioinformatics workflows from first principles☆26Updated this week
- Phyling: phylogenetic inference from annotated genomes☆34Oct 27, 2026Updated last week
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆96May 3, 2025Updated last year
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆21Sep 18, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 5 years ago
- do some exercise☆15Dec 2, 2025Updated 11 months ago
- Rust crate to deal with phylogenetic trees☆14Sep 4, 2026Updated last month
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆271Oct 14, 2026Updated 2 weeks ago
- Pipeline for eukaryotic genome annotation based on external evidences☆15Feb 23, 2023Updated 3 years ago
- GFF toolkit☆17Oct 20, 2026Updated 2 weeks ago
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated 2 months ago
- ☆41Apr 9, 2026Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- The Pathogenwatch Vibrio cholerae genotyping tool☆11Oct 9, 2026Updated 3 weeks ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆20Oct 27, 2026Updated last week
- UFCG: Universal Fungal Core Genes☆37Jul 29, 2025Updated last year
- Foreign Contamination Screening caller scripts and documentation☆180Mar 18, 2025Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated last month
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆33Sep 18, 2026Updated last month
- Convert genbank files to a swath of other formats☆32Aug 9, 2026Updated 2 months ago
- Randomly subsample sequencing reads or alignments☆280Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆31Updated this week
- Classify metagenomic contigs as eukaryotic or prokaryotic☆47Feb 17, 2023Updated 3 years ago
- ☆16Apr 2, 2024Updated 2 years ago
- Microbial Culture Media Knowledge Graph - Comprehensive collection of 10,000+ culture media recipes from major international repositories…☆12Updated this week
- ☆45Oct 29, 2022Updated 4 years ago