nextgenusfs / funannotate2Links
Eukaryotic genome annotation software.
☆19Updated 2 months ago
Alternatives and similar repositories for funannotate2
Users that are interested in funannotate2 are comparing it to the libraries listed below
Sorting:
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last week
- Pangenome analysis of eukaryotes.☆19Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 5 months ago
- Evaluating Nanopore-based bacterial variant calling☆19Updated 2 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- Split k-mer analysis – version 2☆92Updated 2 months ago
- Bacterial GWAS analysis☆43Updated 2 months ago
- Colinear block visualisation tool☆31Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Updated 4 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆25Updated 2 months ago
- Gene-flank analysis tool☆30Updated 9 months ago
- Graph-based assembly phasing☆87Updated 5 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆63Updated 3 months ago
- IslandPath standalone software☆33Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- whole genome MLST analysis☆48Updated 3 months ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Bifrost graph gene caller.☆95Updated 2 weeks ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago