lukaslueg / hyperminhashLinks
☆14Updated last year
Alternatives and similar repositories for hyperminhash
Users that are interested in hyperminhash are comparing it to the libraries listed below
Sorting:
- Parallel Construction of Suffix Arrays in Rust☆26Updated 3 months ago
- Fast sequence distance estimates☆15Updated 2 weeks ago
- ☆22Updated 3 years ago
- Fast and Memory Efficient Genome Sketching via HyperMinHash and UltraLogLog☆14Updated this week
- Rust library for processing sequencing reads.☆25Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 2 months ago
- Alignment-based gene expression quantification☆29Updated last week
- Fast approximate string searching☆51Updated this week
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆12Updated 3 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆21Updated 2 years ago
- Rust package for constructing and analyzing phylogenies.☆15Updated 4 months ago
- ☆15Updated 2 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆12Updated 6 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆18Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Updated 10 months ago
- Just another minhash implementation.☆12Updated last week
- bgzip support for Rust☆16Updated last year
- ☆11Updated 3 years ago
- A genomic minhashing implementation in Rust☆99Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆22Updated 9 years ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 9 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 9 months ago
- Singular Genomics Demultiplexing Tool☆16Updated last year
- your friendly pangenome graph genotyper☆10Updated 2 years ago
- A minimap2 implementation with binseq inputs☆16Updated last month
- String algorithm visualizations☆13Updated 2 years ago
- A Rust library for building modular, fast and compact indexes over genomic data☆12Updated last year