lukaslueg / hyperminhash
☆14Updated last year
Alternatives and similar repositories for hyperminhash
Users that are interested in hyperminhash are comparing it to the libraries listed below
Sorting:
- ☆21Updated 2 years ago
- bgzip support for Rust☆16Updated last year
- Parallel Construction of Suffix Arrays in Rust☆23Updated 2 weeks ago
- Rust utility code☆33Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 6 months ago
- Out-of-memory sorting of large datasets map / reduce style processing☆47Updated 2 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated last year
- Alignment-based gene expression quantification☆28Updated last month
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- Hardware go brrr bounded context suffix array construction algorithm☆18Updated last year
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated last year
- ☆12Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 10 months ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆30Updated last week
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 2 weeks ago
- A genomic minhashing implementation in Rust☆94Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 10 months ago
- Fast and Memory Efficient Genome Sketching via HyperMinHash☆10Updated 3 months ago
- Rust implmentation of VCF parser☆23Updated 2 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆37Updated last month
- A Rust library for parsing, writing and manipulating Genbank sequence files☆17Updated 3 weeks ago
- ntHash implementation in Rust☆36Updated 10 months ago
- Rust package for constructing and analyzing phylogenies.☆15Updated 2 weeks ago
- Calculation of euclidean distance between vectors, with SIMD☆11Updated last year
- Simple succinct data structures (in Rust)☆50Updated 5 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 5 months ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- ☆15Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆29Updated 10 months ago
- Just another minhash implementation.☆12Updated 2 months ago