☆18Oct 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for hyperminhash
Users that are interested in hyperminhash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆31Updated this week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 2 weeks ago
- ☆14Jul 30, 2026Updated 3 months ago
- Benchmark data structures for kmer sets.☆13Aug 29, 2026Updated 2 months ago
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 7 months ago
- ☆28Updated this week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- ☆10Jan 20, 2026Updated 9 months ago
- Fast long-read RNA-seq mapping to a transcriptome with locally consistent parsing☆22Updated this week
- Bitpacked sequence trait and implementation☆19Oct 26, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- ☆11Dec 18, 2025Updated 10 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunst☆23Aug 10, 2026Updated 2 months ago
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Feb 19, 2020Updated 6 years ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 9 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 5 months ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 4 years ago
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rust bindings to Intelligent Storage Acceleration Library (ISA-L)☆15Feb 2, 2025Updated last year
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- Fast sequence distance estimates☆35Updated this week
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- ☆21Dec 26, 2025Updated 10 months ago
- A rust-native port of wfa2lib☆15Aug 1, 2026Updated 3 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆51Oct 22, 2026Updated last week
- Fast and exact gap-affine partial order alignment☆71Oct 22, 2026Updated last week
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A decoder that automatically detects compression format (gzip, bzip2, xz, zstd) via external crates. Includes encoder as well.☆13Jan 8, 2026Updated 9 months ago
- Fast Approximate Pattern Matching using Search Schemes☆20Jul 11, 2026Updated 3 months ago
- Mapping sequencing data to De Bruijn graphs, fast☆38Oct 23, 2026Updated last week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 months ago
- Fast and Optimal Affine-Gap Sequence-to-Graph Alignment☆37Jul 15, 2026Updated 3 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆49Oct 26, 2026Updated last week