Alternatives and similar repositories for hyperminhash

Users that are interested in hyperminhash are comparing it to the libraries listed below

• 38 / grass
  ☆22Updated 2 years ago
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆24Updated 2 months ago
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆99Updated 3 weeks ago
• Daniel-Liu-c0deb0t / simple-saca
  Hardware go brrr bounded context suffix array construction algorithm
  ☆18Updated last year
• jean-pierreBoth / probminhash
  Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms
  ☆31Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆33Updated last year
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆29Updated 3 months ago
• bacpop / sketchlib.rust
  Fast sequence distance estimates
  ☆12Updated last week
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆18Updated last week
• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆37Updated 2 weeks ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated last month
• jltsiren / simple-sds
  Simple succinct data structures (in Rust)
  ☆50Updated 7 months ago
• anp / parasailors
  Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.
  ☆22Updated 8 years ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated 2 years ago
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆20Updated 2 months ago
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆30Updated this week
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated 10 months ago
• ratschlab / Project2020-seq-tensor-sketching
  ☆8Updated 3 years ago
• gtnao / rust-rampart
  Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.
  ☆12Updated 3 years ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• luizirber / niffler
  Simple and transparent support for compressed files.
  ☆76Updated 5 months ago
• RagnarGrootKoerkamp / alg-viz
  String algorithm visualizations
  ☆13Updated 2 years ago
• jeffrey-xiao / probabilistic-collections-rs
  ☆15Updated 2 years ago
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆39Updated 3 weeks ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago