Alternatives and similar repositories for hyperminhash

Users that are interested in hyperminhash are comparing it to the libraries listed below

• 38 / grass
  ☆22Updated 3 years ago
• bacpop / sketchlib.rust
  Fast sequence distance estimates
  ☆24Updated last week
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆26Updated 7 months ago
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆20Updated last week
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 6 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆30Updated 3 months ago
• Daniel-Liu-c0deb0t / simple-saca
  Hardware go brrr bounded context suffix array construction algorithm
  ☆19Updated 2 years ago
• pjedge / rust-spoa
  Rust crate with bindings and interface to the SPOA library for generating consensus sequences.
  ☆11Updated 6 years ago
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• St4NNi / jam-rs
  Just another minhash implementation.
  ☆12Updated 3 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated 3 weeks ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated last year
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• tolkit / gfatk
  A plant organellar Graphical Fragment Assembly toolkit
  ☆16Updated 3 months ago
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated last year
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆101Updated 5 months ago
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated last year
• RagnarGrootKoerkamp / alg-viz
  String algorithm visualizations
  ☆12Updated 2 years ago
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)
  ☆15Updated 7 months ago
• anp / parasailors
  Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.
  ☆21Updated 9 years ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• COMBINE-lab / mazu
  A Rust library for building modular, fast and compact indexes over genomic data
  ☆12Updated 2 years ago
• jeffrey-xiao / probabilistic-collections-rs
  ☆16Updated 2 years ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated 2 years ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆33Updated 2 years ago
• COMBINE-lab / pufferfish2
  ☆15Updated 2 years ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year