Alternatives and similar repositories for hyperminhash

Users that are interested in hyperminhash are comparing it to the libraries listed below

• bacpop / sketchlib.rust
  Fast sequence distance estimates
  ☆15Updated 2 months ago
• 38 / grass
  ☆22Updated 3 years ago
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆26Updated 6 months ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 4 months ago
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆20Updated 3 weeks ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• pjedge / rust-spoa
  Rust crate with bindings and interface to the SPOA library for generating consensus sequences.
  ☆11Updated 6 years ago
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated last year
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated 2 months ago
• St4NNi / jam-rs
  Just another minhash implementation.
  ☆12Updated 2 months ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• Daniel-Liu-c0deb0t / simple-saca
  Hardware go brrr bounded context suffix array construction algorithm
  ☆18Updated 2 years ago
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated last year
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated last year
• gtnao / rust-rampart
  Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.
  ☆12Updated 3 years ago
• jeffrey-xiao / probabilistic-collections-rs
  ☆15Updated 2 years ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated 11 months ago
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated 2 weeks ago
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆99Updated 4 months ago
• COMBINE-lab / pufferfish2
  ☆15Updated last year
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• pangenome / gfagino
  your friendly pangenome graph genotyper
  ☆10Updated 2 years ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 11 months ago
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆16Updated this week
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year
• tolkit / gfatk
  A plant organellar Graphical Fragment Assembly toolkit
  ☆16Updated last month
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)
  ☆15Updated 6 months ago