☆18Jul 21, 2026Updated this week
Alternatives and similar repositories for hyperminhash
Users that are interested in hyperminhash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 6 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated 3 weeks ago
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 3 months ago
- ☆17Jan 6, 2023Updated 3 years ago
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Feb 19, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- HyperTwoBits implementation☆17Aug 29, 2025Updated 10 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Updated this week
- Fast sequence distance estimates☆30Jul 1, 2026Updated 3 weeks ago
- Hidden Markov Model based Copy number caller☆20Updated this week
- ☆27Jun 16, 2026Updated last month
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Fast and Optimal Affine-Gap Sequence-to-Graph Alignment☆28Jul 15, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 4 years ago
- ☆21Dec 26, 2025Updated 6 months ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Updated this week
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated 2 weeks ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 weeks ago
- ☆17Aug 8, 2025Updated 11 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- A rust implementation of STAR☆52Jul 3, 2026Updated 2 weeks ago
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 2 months ago
- Sketch-based surveillance platform☆14Updated this week
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- A tool for sniffing out the differences in vari-Ants☆43Apr 7, 2026Updated 3 months ago
- Fast approximate string searching☆159Jul 13, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A genomic minhashing implementation in Rust☆103Jul 8, 2026Updated 2 weeks ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- A HyperLogLog implementation in Rust.☆52Feb 9, 2026Updated 5 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆42Jul 10, 2026Updated 2 weeks ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated 2 weeks ago