☆18Apr 18, 2026Updated 2 weeks ago
Alternatives and similar repositories for hyperminhash
Users that are interested in hyperminhash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 3 months ago
- HyperTwoBits implementation☆17Aug 29, 2025Updated 8 months ago
- Fast sequence distance estimates☆28Apr 27, 2026Updated last week
- ☆17Jan 6, 2023Updated 3 years ago
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Feb 19, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆23Updated this week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 7 months ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated last month
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 4 years ago
- ☆21Dec 26, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated last week
- Host depletion optimised for clinical metagenomic sequencing applications☆17Nov 18, 2024Updated last year
- A SIMD-accelerated library to compute random minimizers☆42Apr 6, 2026Updated 3 weeks ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Parsing and evaluating gene annotation and spliced alignment☆29Jul 22, 2025Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- SuperMinHash: A New Minwise Hashing Algorithm for Jaccard Similarity Estimation☆25Jan 1, 2018Updated 8 years ago
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Updated this week
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 9 months ago
- Fast approximate string searching☆123Apr 11, 2026Updated 3 weeks ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 10 months ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Ultra-rapid detection of viral variants directly from sequencing data☆40Feb 17, 2026Updated 2 months ago
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated 2 years ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 5 months ago
- A HyperLogLog implementation in Rust.☆52Feb 9, 2026Updated 2 months ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- A cookiecutter template for creating MCP (Model Control Protocol) servers☆21Apr 7, 2026Updated 3 weeks ago
- De novo clustering of long transcript reads into genes☆22Dec 15, 2025Updated 4 months ago