aljpetri / isONclust3Links
De novo clustering of long transcript reads into genes
☆15Updated 2 months ago
Alternatives and similar repositories for isONclust3
Users that are interested in isONclust3 are comparing it to the libraries listed below
Sorting:
- Genome Assembly 102☆14Updated 2 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last month
- AlfaPang builds pangenome graphs without alignments or references.☆10Updated 2 weeks ago
- ☆17Updated last year
- Prefix-renaming FASTA records really fast.☆17Updated last year
- ☆18Updated 5 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Kmer Analysis of Pileups for Genotyping☆31Updated 3 weeks ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆16Updated 2 years ago
- ☆16Updated 2 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 9 months ago
- Differential k-mer analysis☆36Updated last year
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆12Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 8 months ago
- Long-read aligner to pangenome graphs☆26Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- ☆12Updated 7 months ago
- ☆25Updated 10 months ago
- ☆24Updated 7 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 9 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- Extracting paths from assembly graphs☆23Updated last year
- ☆20Updated this week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago