De novo clustering of long transcript reads into genes
☆22Dec 15, 2025Updated 4 months ago
Alternatives and similar repositories for isONclust3
Users that are interested in isONclust3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 10 months ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Mar 7, 2026Updated 2 months ago
- ☆12Mar 21, 2026Updated last month
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Updated this week
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Parsing and evaluating gene annotation and spliced alignment☆29Jul 22, 2025Updated 9 months ago
- ☆18Apr 18, 2026Updated 2 weeks ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 9 months ago
- Deep learning embedding for nucleotide sequences☆20Mar 12, 2026Updated last month
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- reference-free transcriptome assembly for short and long reads☆109Mar 13, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 5 years ago
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last week
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- De novo clustering of long transcript reads into genes☆76Apr 27, 2025Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- ☆17Apr 1, 2018Updated 8 years ago
- C++ library for parsing several formats in bioinformatics☆10May 18, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆29Apr 1, 2026Updated last month
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated 2 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 8 months ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- Scoring GT/AG sites for improving spliced alignment☆52Nov 10, 2025Updated 5 months ago
- ☆15Jan 19, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A genome diagram generator for microbes and organelles☆81Updated this week
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- ☆15Jan 28, 2026Updated 3 months ago
- Improving gene isoform quantification with miniQuant☆41Jan 13, 2026Updated 3 months ago
- Differential k-mer analysis☆40Jan 29, 2024Updated 2 years ago
- The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequenci…☆10Apr 5, 2026Updated last month
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 weeks ago