De novo clustering of long transcript reads into genes
☆24Dec 15, 2025Updated 8 months ago
Alternatives and similar repositories for isONclust3
Users that are interested in isONclust3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo construction of isoforms from long-read data☆38Jul 2, 2026Updated last month
- reference-free transcriptome assembly for short and long reads☆111Mar 13, 2026Updated 5 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 11 months ago
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 3 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆61Jul 5, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- k-mer-based non-Bayesian Taxonomic Classifier☆20May 28, 2026Updated 2 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- ☆27Jun 16, 2026Updated 2 months ago
- tandemtwister: Tandem repeat genotyping tool☆19Feb 1, 2026Updated 6 months ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆45Dec 18, 2025Updated 8 months ago
- Error correction of ONT transcript reads☆58Updated this week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 2 months ago
- Enumerating bubbles in pangenome graphs☆16Aug 11, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Jul 22, 2026Updated 3 weeks ago
- Scoring GT/AG sites for improving spliced alignment☆58Nov 10, 2025Updated 9 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆17Mar 13, 2026Updated 5 months ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- ☆21Feb 15, 2025Updated last year
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 months ago
- base-level dotplots from PAF alignments☆36Sep 18, 2025Updated 10 months ago
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 9 months ago
- ☆20Jan 13, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- A machine learning approach to alignment filtering☆16Jun 18, 2026Updated last month
- De novo clustering of long transcript reads into genes☆81Apr 27, 2025Updated last year
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆114Jul 11, 2026Updated last month
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 7 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last month
- ☆29Jul 16, 2022Updated 4 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 2 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆96Aug 7, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated last month
- source code for EVM☆126Nov 29, 2024Updated last year
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 6 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 5 months ago
- ☆15Jan 19, 2022Updated 4 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆28Jun 14, 2026Updated 2 months ago