Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift
☆19Sep 30, 2024Updated last year
Alternatives and similar repositories for nasw
Users that are interested in nasw are comparing it to the libraries listed below
Sorting:
- 1-code framework: docs, C-library, and tools☆25Jan 11, 2026Updated last month
- k-mer similarity analysis pipeline☆21Nov 20, 2025Updated 3 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 10 months ago
- Statistical Distributions from R☆12Apr 24, 2014Updated 11 years ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆110Updated this week
- Reference-guided multiple sequence alignment of viral genomes☆70Nov 6, 2025Updated 3 months ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- ☆14May 12, 2023Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆32Oct 23, 2023Updated 2 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆61Nov 7, 2023Updated 2 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- Banded Striped DNA Sequence Alignment☆52May 9, 2023Updated 2 years ago
- simple program to rotate a circular sequence to start at a given position or string☆19Jul 9, 2023Updated 2 years ago
- ☆22Dec 9, 2023Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Jan 6, 2026Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Quality control on genetic variants from next-generation sequencing data using random forest☆20May 26, 2022Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Sep 4, 2025Updated 6 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Feb 26, 2026Updated last week
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆88Oct 25, 2022Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 6 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome☆11Feb 19, 2021Updated 5 years ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆12Sep 9, 2021Updated 4 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆16May 19, 2023Updated 2 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- R Package for phasing of single cell Strand-seq data☆10Jan 14, 2025Updated last year