lh3 / naswLinks
Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift
☆19Updated last year
Alternatives and similar repositories for nasw
Users that are interested in nasw are comparing it to the libraries listed below
Sorting:
- k-mer similarity analysis pipeline☆22Updated 2 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated last year
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 4 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆36Updated last year
- ☆13Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Updated 2 years ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 8 months ago
- De novo VIral Genome Annotator☆24Updated last month
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 4 years ago
- transposable element typing pipeline☆19Updated last year
- Nanopore Real-Time Analysis Tool☆17Updated last year
- AC-DIAMOND is a DNA-protein alignment tool☆16Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Variant call verification☆16Updated 9 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Updated 4 months ago
- ☆46Updated 2 months ago
- ☆20Updated 2 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 5 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 7 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago