Alternatives and similar repositories for polars-bio

Users that are interested in polars-bio are comparing it to the libraries listed below

• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 10 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 6 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated last month
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 2 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated 3 weeks ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆105Updated this week
• nanoporetech / Pore-C-Snakemake
  ☆33Updated 2 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆62Updated last month
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆29Updated last week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆60Updated this week
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆29Updated 2 weeks ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated last week
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆38Updated 7 months ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated last month
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆91Updated last month
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆70Updated last week
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆27Updated last year
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆62Updated 2 weeks ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 3 months ago
• gagneurlab / absplice
  ☆39Updated 9 months ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated last month
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆40Updated 2 months ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆52Updated 4 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 3 weeks ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 10 months ago
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆36Updated last year
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆52Updated 2 weeks ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated last week
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆22Updated last week