Alternatives and similar repositories for polars-bio

Users that are interested in polars-bio are comparing it to the libraries listed below

• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• pyranges / pyranges_1.x
  Pyranges: a Python framework for ultrafast sequence interval operations
  ☆28Updated last week
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated 11 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 4 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last week
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆60Updated last month
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆118Updated 3 weeks ago
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆63Updated last month
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆108Updated last month
• databio / gtars
  Performance-critical tools to manipulate, analyze, and process genomic interval data. Primarily focused on building tools for geniml - ou…
  ☆21Updated this week
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 7 months ago
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆28Updated last month
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆132Updated last week
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• pyranges / ruranges
  Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library
  ☆21Updated last month
• omgenomics / bio-data-zoo
  Example genomics data for tool developers
  ☆117Updated last year
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆80Updated 10 months ago
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated 2 years ago
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆61Updated last week
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆144Updated last week
• open2c / bioframe
  Genomic interval operations on Pandas DataFrames
  ☆184Updated last week
• brentp / vcfexpress
  expressions on VCFs
  ☆87Updated 7 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 3 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 2 months ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 7 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆141Updated 2 months ago
• betteridiot / bamnostic
  a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
  ☆98Updated 5 months ago
• Boehringer-Ingelheim / dso
  Data Science Operations (dso) command line tool
  ☆44Updated 3 months ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆47Updated 3 months ago