Blazing-Fast Bioinformatic Operations on Python DataFrames
☆166Jun 5, 2026Updated last week
Alternatives and similar repositories for polars-bio
Users that are interested in polars-bio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-performance BigWig and BigBed library in Rust☆117Jun 7, 2026Updated last week
- Efficient querying of biological databases☆44Oct 27, 2025Updated 7 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101May 29, 2024Updated 2 years ago
- Container class to represent genomic locations and support genomic analysis☆27Jun 8, 2026Updated last week
- Oxbow makes genomic data ready for high-performance analytics.☆153Jun 8, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Genomic interval operations on Pandas DataFrames☆191Jun 1, 2026Updated 2 weeks ago
- Parsing and evaluating gene annotation and spliced alignment☆29Jul 22, 2025Updated 10 months ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆33Apr 16, 2026Updated 2 months ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated last month
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Universal Single-Cell Genomics Preprocessing package☆49Feb 21, 2026Updated 3 months ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆196Mar 10, 2025Updated last year
- A declarative interactive genomics visualization library for Python.☆244Nov 24, 2025Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Performance-critical tools to manipulate, analyze, and process genomic interval data☆27Updated this week
- Exon is an OLAP query engine specifically for biology and life science applications.☆71Mar 26, 2025Updated last year
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year
- Performant Pythonic GenomicRanges☆495Apr 23, 2026Updated last month
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆23Aug 22, 2025Updated 9 months ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bioinformatics I/O libraries in Rust☆710Jun 9, 2026Updated last week
- Genome browser and variant annotation☆394Jun 5, 2026Updated last week
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 7 months ago
- Complex structural variant visualization for HiFi sequencing data☆48Oct 24, 2025Updated 7 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Fast approximate string searching☆148Updated this week
- Python bindings to UCSC BigWig and BigBed library☆36Jun 8, 2026Updated last week
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Per-base per-nucleotide depth analysis☆149May 9, 2026Updated last month
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆43Dec 18, 2025Updated 5 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- Scalable genetics toolkit☆277Mar 2, 2026Updated 3 months ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Convert bioinformatics file formats to Zarr☆47Jun 4, 2026Updated last week
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago