Blazing-Fast Bioinformatic Operations on Python DataFrames
☆154Apr 10, 2026Updated last week
Alternatives and similar repositories for polars-bio
Users that are interested in polars-bio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-performance BigWig and BigBed library in Rust☆113Feb 13, 2026Updated 2 months ago
- Efficient querying of biological databases☆44Oct 27, 2025Updated 5 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- Oxbow makes genomic data ready for high-performance analytics.☆153Mar 21, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- pyranges/bioframe for polars☆18Jul 20, 2023Updated 2 years ago
- Genomic interval operations on Pandas DataFrames☆191Apr 6, 2026Updated last week
- Parsing and evaluating gene annotation and spliced alignment☆29Jul 22, 2025Updated 8 months ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆30Mar 27, 2026Updated 3 weeks ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16Jun 4, 2025Updated 10 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Universal Single-Cell Genomics Preprocessing package☆49Feb 21, 2026Updated last month
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆196Mar 10, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A declarative interactive genomics visualization library for Python.☆243Nov 24, 2025Updated 4 months ago
- Exon is an OLAP query engine specifically for biology and life science applications.☆70Mar 26, 2025Updated last year
- Performance-critical tools to manipulate, analyze, and process genomic interval data☆26Updated this week
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year
- Performant Pythonic GenomicRanges☆494Jan 27, 2026Updated 2 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- a minimal, scriptable genome browser for python☆53Dec 20, 2024Updated last year
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bioinformatics I/O libraries in Rust☆676Updated this week
- Genome browser and variant annotation☆392Apr 8, 2026Updated last week
- bioinformatics toolkit in rust☆103Feb 15, 2026Updated 2 months ago
- Fast approximate string searching☆115Apr 8, 2026Updated last week
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 5 months ago
- Complex structural variant visualization for HiFi sequencing data☆47Oct 24, 2025Updated 5 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Aug 22, 2025Updated 7 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Python bindings to UCSC BigWig and BigBed library☆36Apr 6, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated last month
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆42Dec 18, 2025Updated 3 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆31Nov 25, 2024Updated last year
- Scalable genetics toolkit☆275Mar 2, 2026Updated last month
- python implementation of the PAGE algorithm☆22Feb 15, 2026Updated 2 months ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago