DeWitP / SFGLinks
The Simple Fool's Guide to population genomics using RNA-Seq
☆28Updated 9 years ago
Alternatives and similar repositories for SFG
Users that are interested in SFG are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆11Updated last month
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated last month
- ☆30Updated 2 years ago
- Simple script to generate whole-genome coverage plots☆19Updated 10 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- ☆15Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)