DeWitP / SFG
The Simple Fool's Guide to population genomics using RNA-Seq
☆28Updated 8 years ago
Alternatives and similar repositories for SFG:
Users that are interested in SFG are comparing it to the libraries listed below
- ☆17Updated 9 years ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆11Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Visualising discordant reads☆15Updated 9 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 6 years ago
- Simple script to generate whole-genome coverage plots☆18Updated 9 years ago
- Bayesian reconstruction of ancient DNA fragments☆28Updated 8 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Repo to analyze population genetic data with many different methods☆15Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- Population-wide Deletion Calling☆35Updated last week
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- ☆30Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆21Updated 5 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated 9 months ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 4 years ago