[mu]tation [s]pectrum [h]istory [i]nference
☆27Aug 26, 2026Updated last month
Alternatives and similar repositories for mushi
Users that are interested in mushi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Nov 13, 2020Updated 5 years ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- Simulate ARGs and genomic sequence data using population genetic models☆217Sep 15, 2026Updated last week
- Recombination Landscape Estimation using Recurrent Neural Networks☆72Mar 27, 2026Updated 6 months ago
- Tools for describing and manipulating demographic models.☆18Aug 4, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- A library of standard population genetic models☆144Updated this week
- Population-scale Ancestral Recombination Graph (ARG) library☆191Sep 14, 2026Updated last week
- Infer demographic history with the Moran model☆52Jun 14, 2025Updated last year
- deep learning prediction of geographic location from individual genome sequences☆54Jan 20, 2025Updated last year
- ☆16Jun 12, 2020Updated 6 years ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆50May 26, 2026Updated 4 months ago
- Unfazed by genomic variant phasing☆29May 26, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Aug 25, 2026Updated last month
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 8 months ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆233Updated this week
- ☆12Nov 23, 2020Updated 5 years ago
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 9 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆45Nov 13, 2019Updated 6 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆63Feb 10, 2026Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Jul 8, 2026Updated 2 months ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- Scalable population structure inference☆19Oct 22, 2022Updated 3 years ago
- ☆14Dec 3, 2024Updated last year
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- ☆22Sep 10, 2020Updated 6 years ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆119Aug 21, 2023Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆49Apr 17, 2026Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Population genetic simulations in R☆64Sep 18, 2026Updated last week
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- Implementation of the treeSeg algorithm as an R package.☆14Feb 2, 2026Updated 7 months ago
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 6 years ago
- Composite of Multiple Signals: tests for selection in meiotically recombinant populations☆14Jul 4, 2020Updated 6 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆46Nov 25, 2022Updated 3 years ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆29Mar 7, 2025Updated last year