Magdoll / CoSA
Coronavirus (SARS-Cov-2) sequencing analysis
☆10Updated 3 years ago
Alternatives and similar repositories for CoSA:
Users that are interested in CoSA are comparing it to the libraries listed below
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 6 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆12Updated 3 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated last month
- Benchmarking variant calling in polyploids☆13Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- ☆16Updated 2 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Variant call adjudication☆16Updated 9 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Unfazed by genomic variant phasing☆26Updated 9 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 11 months ago
- ☆9Updated 2 years ago
- ☆15Updated 3 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- ☆14Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆11Updated 4 months ago
- General purpose utility related to GAF files☆22Updated this week
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- ☆10Updated 3 weeks ago
- Benchmark structural variant calls against a reference set☆17Updated 5 months ago