maxfieldk / TE-SeqLinks
Snakemake pipeline to analyze transposable element 'omics data.
☆29Updated last month
Alternatives and similar repositories for TE-Seq
Users that are interested in TE-Seq are comparing it to the libraries listed below
Sorting:
- read and analyse RepeatMasker output☆27Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 3 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆23Updated 5 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- SV genotyper for long reads with a variation graph☆14Updated 4 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- TD2☆25Updated last week
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Computational Analysis of Gene Expression Evolution☆44Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- ☆44Updated last year
- ☆31Updated 11 months ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- ☆16Updated 6 years ago
- ☆31Updated last year
- SV calling for diploid assemblies☆29Updated last year
- Centromere mapping and annotation pipeline☆16Updated last week
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- ☆37Updated 4 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 4 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- ☆18Updated last year
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 3 weeks ago
- Consensus genome annotation using OMA☆27Updated 5 months ago