maxfieldk / TE-SeqLinks
Snakemake pipeline to analyze transposable element 'omics data.
☆27Updated last week
Alternatives and similar repositories for TE-Seq
Users that are interested in TE-Seq are comparing it to the libraries listed below
Sorting:
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- read and analyse RepeatMasker output☆24Updated 2 years ago
- Yet another Hi-C scaffolding tool☆21Updated 8 months ago
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- ☆31Updated 10 months ago
- SV genotyper for long reads with a variation graph☆12Updated 3 months ago
- ☆17Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- ☆36Updated last week
- SV calling for diploid assemblies☆28Updated last year
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- ☆42Updated last year
- ☆30Updated 6 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Invertory of TE-gene isoforms☆11Updated last year
- ☆30Updated 5 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 6 months ago
- TD2☆13Updated last month
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year