☆21Apr 15, 2024Updated 2 years ago
Alternatives and similar repositories for hprc-tutorials
Users that are interested in hprc-tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated last year
- Variant Calling for the HPRC2☆16May 26, 2026Updated 2 weeks ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 10 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A toolkit for exploring regions of variation in pangenomes☆14May 19, 2026Updated 3 weeks ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 11 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆56Jun 3, 2025Updated last year
- GBWT-based handle graph☆34May 27, 2026Updated 2 weeks ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆17Aug 30, 2025Updated 9 months ago
- General purpose utility related to GAF files☆29May 20, 2026Updated 3 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆133Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated last year
- ☆133Oct 18, 2023Updated 2 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 7 months ago
- Pangenome-based genome inference☆170Jun 2, 2026Updated last week
- ☆19May 10, 2023Updated 3 years ago
- implicit pangenome graph☆107Updated this week
- ☆49May 28, 2026Updated 2 weeks ago
- a nextflow pipeline for creating a pangenome with minigraph-cactus☆16Sep 13, 2024Updated last year
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆11Sep 4, 2024Updated last year
- ☆101Apr 22, 2024Updated 2 years ago
- Library for the Handle Graph abstraction☆24Jan 15, 2026Updated 4 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 4 months ago
- WDL’s and Dockerfiles for assembly QC process☆73Apr 28, 2026Updated last month
- A list of software for pangenomics☆191May 21, 2026Updated 3 weeks ago
- ☆191Feb 10, 2026Updated 4 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆45Apr 18, 2026Updated last month
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 2 months ago
- Immuological gene typing and annotation for genome assembly☆39Mar 13, 2025Updated last year
- The PanGenome Graph Builder☆17Jul 17, 2024Updated last year
- ☆13May 27, 2025Updated last year
- ☆15Jun 29, 2021Updated 4 years ago