human-pangenomics / hprc-tutorials
☆14Updated 11 months ago
Alternatives and similar repositories for hprc-tutorials:
Users that are interested in hprc-tutorials are comparing it to the libraries listed below
- Genome Assembly 102☆14Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 5 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 7 months ago
- ☆22Updated 6 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Computational Pangenomics☆17Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 9 months ago
- ☆35Updated last year
- SV calling for diploid assemblies☆26Updated 11 months ago
- Kmer Analysis of Pileups for Genotyping☆21Updated last month
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 5 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- Snakemake pipeline to analyze transposable element 'omics data.☆17Updated this week
- Tandem Repeats Finder: a program to analyze DNA sequences☆14Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Draw a dot plot from a paf alignment☆26Updated 2 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated last year
- Phasing reads with secondary alignments☆17Updated 3 months ago
- SV genotyper for long reads with a variation graph☆12Updated last year
- Tandem repeat genotyping with long reads☆28Updated last month
- ☆25Updated last year
- Programs implementing the trio-binning genome assembly method☆19Updated last year