human-pangenomics / hprc-tutorialsLinks
☆18Updated last year
Alternatives and similar repositories for hprc-tutorials
Users that are interested in hprc-tutorials are comparing it to the libraries listed below
Sorting:
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Kmer Analysis of Pileups for Genotyping☆32Updated 2 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Genome Assembly 102☆15Updated 4 months ago
- ☆36Updated last month
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- ☆27Updated 2 years ago
- Phased structural variant discovery in pangenomes☆35Updated last year
- ☆21Updated 6 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Phasing reads with secondary alignments☆20Updated 9 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- ☆21Updated last week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- ☆28Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- SV calling for diploid assemblies☆28Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated 2 weeks ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆34Updated 2 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- ☆37Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 6 months ago
- Computational Pangenomics☆17Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month