Alternatives and similar repositories for hprc-tutorials

Users that are interested in hprc-tutorials are comparing it to the libraries listed below

• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated 2 weeks ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• maickrau / ribotin
  ☆36Updated 3 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated this week
• mrvollger / NucFreq
  ☆38Updated 3 weeks ago
• hitbc / gcSV
  ☆21Updated 8 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• marbl / training
  Genome Assembly 102
  ☆14Updated 6 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 4 months ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆31Updated 4 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆37Updated last year
• agshumate / LiftoffTools
  ☆28Updated 2 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• vgteam / giraffe-sv-paper
  ☆43Updated last year
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆29Updated last year
• at-cg / RAFT
  ☆28Updated last year
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• tprodanov / locityper
  Targeted genotyper for complex polymorphic genes
  ☆28Updated last week
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated 10 months ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆35Updated 3 years ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• codeatcg / VRPG
  an interactive visualization and interpretation framework of reference-projected pangenome graphs
  ☆37Updated 8 months ago
• IGDRion / ANNEXA
  Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).
  ☆15Updated last week
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆14Updated 2 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 6 months ago