Open Human Genome Library
☆67Dec 22, 2025Updated 6 months ago
Alternatives and similar repositories for OpenHGL
Users that are interested in OpenHGL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆21Jul 1, 2026Updated 2 weeks ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated 3 weeks ago
- Variant Calling for the HPRC2☆16May 26, 2026Updated last month
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 6 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆100Jan 28, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 10 months ago
- implicit pangenome graph☆109Jul 8, 2026Updated last week
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆42Jul 1, 2026Updated 2 weeks ago
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated last month
- A complete diploid human genome☆153Jun 23, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆102Apr 22, 2024Updated 2 years ago
- ANI based satellite annotation☆27Jun 9, 2026Updated last month
- Fast approximate string searching☆158Jul 13, 2026Updated last week
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 2 months ago
- plane sweep filtering genome alignments☆24May 23, 2026Updated last month
- Tools for fiberseq data written in rust.☆69Updated this week
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆40Updated this week
- an API for intersections of genomic data☆148Mar 12, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- ☆19May 10, 2023Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated last month
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆107Jun 25, 2026Updated 3 weeks ago
- ☆17Mar 1, 2026Updated 4 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 10, 2026Updated last week
- GFA visualizer, GPU-accelerated using Vulkan☆78Aug 2, 2022Updated 3 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- vcfdist: Accurately benchmarking phased variant calls☆87Updated this week
- Genome browser hub for the T2T genomes and resources☆29Apr 7, 2026Updated 3 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- Misassembly Identifier☆25Jun 2, 2026Updated last month
- ☆12Oct 13, 2021Updated 4 years ago
- Multiple sequence alignment of long tandem repeats☆30Jun 23, 2026Updated 3 weeks ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 2 months ago