Alternatives and similar repositories for BiWFA-paper:

Users that are interested in BiWFA-paper are comparing it to the libraries listed below

• PacificBiosciences / sawfish
  Structural variant discovery and genotyping from mapped PacBio HiFi data
  ☆36Updated this week
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 2 years ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆72Updated 3 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 6 months ago
• bioinf-benchmarking / mapping-benchmarking
  Snakemake pipeline for benchmarking read mappers
  ☆16Updated last year
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated this week
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 9 months ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆46Updated this week
• seryrzu / unialigner
  ☆64Updated 9 months ago
• lh3 / ropebwt3
  BWT construction and search
  ☆108Updated 3 weeks ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 2 years ago
• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆45Updated last year
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 7 months ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆78Updated 3 weeks ago
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆34Updated last month
• lh3 / gwfa
  Proof-of-concept implementation of GWFA for sequence-to-graph alignment
  ☆57Updated 7 months ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆35Updated last week
• Nextomics / NextPolish2
  Repeat-aware polishing genomes assembled using HiFi long reads
  ☆76Updated 2 months ago
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆25Updated last month
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated 2 years ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 3 months ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆96Updated 8 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 5 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆41Updated last month
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆77Updated 9 months ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆76Updated last year