smarco / BiWFA-paperLinks
Bidirectional WFA (Paper)
☆48Updated last year
Alternatives and similar repositories for BiWFA-paper
Users that are interested in BiWFA-paper are comparing it to the libraries listed below
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- ☆67Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆70Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago
- Fast and exact gap-affine partial order alignment☆57Updated 2 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- BWT construction and search☆124Updated 3 weeks ago
- vcfdist: Accurately benchmarking phased variant calls☆85Updated 4 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Banded Striped DNA Sequence Alignment☆49Updated 2 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 9 months ago
- ☆37Updated this week
- Pan-Genomic Matching Statistics☆55Updated last year
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated last month
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 4 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Updated 6 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- A repository for generating strobemers and evalaution☆79Updated last year
- implicit pangenome graph☆86Updated this week
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 9 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56Updated last year
- Snakemake pipeline for benchmarking read mappers☆16Updated 2 years ago