smarco / BiWFA-paper
Bidirectional WFA (Paper)
☆46Updated 10 months ago
Alternatives and similar repositories for BiWFA-paper:
Users that are interested in BiWFA-paper are comparing it to the libraries listed below
- vcfdist: Accurately benchmarking phased variant calls☆79Updated 2 weeks ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆40Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 6 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 7 months ago
- De novo clustering of long transcript reads into genes☆58Updated 3 years ago
- Banded Striped DNA Sequence Alignment☆45Updated last year
- PGR-TK: Pangenome Research Tool Kit☆98Updated 11 months ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆43Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 8 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 2 weeks ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- A repository for generating strobemers and evalaution☆77Updated 11 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 5 months ago
- De novo construction of isoforms from long-read data☆27Updated 3 months ago
- Evaluating genome assemblies☆88Updated 2 weeks ago
- PECAT, a phased error correct and assembly tool☆50Updated 2 months ago
- ☆64Updated 11 months ago
- Yet another k-mer analyzer☆132Updated 11 months ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆57Updated last week
- A tool for simulating random mutations in any genome☆38Updated last year
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- A Rust library providing fully dynamic sets of k-mers with high locality☆44Updated 5 months ago
- ✏️ Genome assembly polishing & SNV detection☆66Updated last month
- ☆24Updated 3 weeks ago
- Benchmarking pairwise aligners☆36Updated last month
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆49Updated 3 weeks ago
- Toolkit for calling structural variants using short or long reads☆100Updated last week
- Pan-Genomic Matching Statistics☆52Updated 11 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆86Updated 4 months ago