Bidirectional WFA (Paper)
☆49May 20, 2024Updated last year
Alternatives and similar repositories for BiWFA-paper
Users that are interested in BiWFA-paper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆210Mar 18, 2026Updated last week
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated last year
- ☆20Nov 30, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆136Feb 22, 2026Updated last month
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 3 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆61Feb 25, 2026Updated last month
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Mar 20, 2026Updated last week
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆24Aug 25, 2025Updated 7 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆38Mar 9, 2026Updated 2 weeks ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last month
- GBWT-based handle graph☆31Mar 17, 2026Updated last week
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆139Jun 23, 2024Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Parallel Sequence to Graph Alignment☆36Nov 26, 2022Updated 3 years ago
- alignment to variation graph inducer☆158Mar 6, 2026Updated 2 weeks ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Mar 11, 2026Updated 2 weeks ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆46May 10, 2023Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Mapping sequencing data to De Bruijn graphs, fast☆32Mar 18, 2026Updated last week
- SIMD partial order alignment tool/library☆176Sep 21, 2025Updated 6 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 2 months ago
- ☆15Aug 6, 2020Updated 5 years ago