kaist-ina / BWA-MEME
BWA-MEME: Faster BWA-MEM2 using learned-index
☆117Updated 8 months ago
Alternatives and similar repositories for BWA-MEME:
Users that are interested in BWA-MEME are comparing it to the libraries listed below
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- A tool for profiling long STRs from short reads☆96Updated 3 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆108Updated last month
- Helper scripts for biological data processing from Sentieon☆64Updated 5 months ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆106Updated last year
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- ☆109Updated 3 weeks ago
- ☆108Updated last year
- Jasmine: SV Merging Across Samples☆208Updated 3 months ago
- ☆119Updated 4 months ago
- Research release basecalling models and configurations☆107Updated 9 months ago
- A complete diploid human genome☆117Updated 2 months ago
- ABRA2☆92Updated 2 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆116Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Aligns short reads using dynamic seed size with strobemers☆165Updated this week
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆101Updated 3 months ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- A minimap2 frontend for PacBio native data formats☆189Updated last month
- NEAT read simulation tools☆98Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last month
- Detecting genome structural variants with deep learning in single molecule sequencing☆106Updated 3 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆141Updated last year
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago