BWA-MEME: Faster BWA-MEM2 using learned-index
☆137Mar 25, 2026Updated last month
Alternatives and similar repositories for BWA-MEME
Users that are interested in BWA-MEME are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The next version of bwa-mem☆831Oct 15, 2025Updated 6 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated last year
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- Aligns short reads using dynamic seed size with strobemers☆196Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆26Jun 20, 2022Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 7 months ago
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 5 months ago
- ☆287Dec 29, 2025Updated 4 months ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆67Mar 20, 2026Updated last month
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆299Sep 6, 2025Updated 8 months ago
- Long read / genome alignment software☆317Dec 16, 2025Updated 4 months ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 2 months ago
- ☆24Jan 25, 2024Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 10 months ago
- Genome browser and variant annotation☆392Apr 28, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago
- Long read based human genomic structural variation detection with cuteSV☆286Mar 26, 2026Updated last month
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆846May 2, 2026Updated last week
- Sequence-to-graph mapper and graph generator☆477Aug 11, 2025Updated 8 months ago
- Yet another k-mer analyzer☆171Dec 30, 2025Updated 4 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Interactive multiscale visualization for structural variation in human genomes☆72Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆182Apr 14, 2026Updated 3 weeks ago
- ☆78Jun 12, 2020Updated 5 years ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆113Feb 28, 2026Updated 2 months ago
- Gene copy number prediction from k-mer frequencies☆16Apr 15, 2026Updated 3 weeks ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- Constructing a pangenome gene graph☆206Aug 11, 2025Updated 8 months ago