pierrepeterlongo / back_to_sequences
☆41Updated 2 months ago
Alternatives and similar repositories for back_to_sequences:
Users that are interested in back_to_sequences are comparing it to the libraries listed below
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last week
- Genome size estimation from long read overlaps☆55Updated 3 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 6 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 5 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- ☆32Updated 2 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆21Updated 5 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- ☆28Updated 7 months ago
- ☆17Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 3 weeks ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- Remove human reads from a sequencing run☆40Updated 7 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- Differential k-mer analysis☆36Updated last year
- ☆20Updated 2 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated 3 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last week
- Kmer Analysis of Pileups for Genotyping☆29Updated 3 weeks ago
- Implementation of ToL genome assembly workflows☆20Updated last week
- crab go snap snap☆40Updated 2 weeks ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 5 months ago