☆47May 12, 2026Updated last month
Alternatives and similar repositories for back_to_sequences
Users that are interested in back_to_sequences are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 5 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Mycobacterium tuberculosis complex lineage typing☆10Jun 22, 2025Updated 11 months ago
- ☆23Jun 4, 2026Updated last week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆55Mar 7, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Sep 29, 2025Updated 8 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 5 months ago
- ☆62Sep 15, 2025Updated 8 months ago
- implicit pangenome graph☆107Jun 6, 2026Updated last week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆37Apr 23, 2025Updated last year
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- General purpose utility related to GAF files☆29May 20, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆53Mar 26, 2026Updated 2 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Updated this week
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Compacted and colored de Bruijn graph construction and querying☆97Jun 5, 2026Updated last week
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- Graph-based assembly phasing☆95Nov 25, 2025Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pairwise whole genome aligner☆237May 19, 2026Updated 3 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29May 31, 2026Updated last week
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆142Updated this week
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 9 months ago
- Aligns short reads using dynamic seed size with strobemers☆198Jun 5, 2026Updated last week
- ☆19May 10, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 6 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 3 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60May 25, 2026Updated 2 weeks ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆23Aug 22, 2025Updated 9 months ago