pierrepeterlongo / back_to_sequencesLinks
☆45Updated 2 months ago
Alternatives and similar repositories for back_to_sequences
Users that are interested in back_to_sequences are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Differential k-mer analysis☆37Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- ☆32Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated 11 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- ☆18Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆28Updated last week
- ☆28Updated last year
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆37Updated 2 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 5 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- General purpose utility related to GAF files☆29Updated 3 weeks ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆68Updated 2 weeks ago
- Remove human reads from a sequencing run☆40Updated 2 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 11 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated 10 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- Genome size estimation from long read overlaps☆61Updated last week
- ☆20Updated 3 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆42Updated last month
- Compute N50/NG50 and auN/auNG☆32Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 months ago