jfarek / alignstatsLinks
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
☆19Updated 11 months ago
Alternatives and similar repositories for alignstats
Users that are interested in alignstats are comparing it to the libraries listed below
Sorting:
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- A software for discovery, genotyping and characterization of structural variants☆22Updated last year
- ☆32Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Structural variant (SV) analysis tools☆39Updated last year
- ☆28Updated 8 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 5 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- ☆35Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 3 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Linear-time de novo Long Read Assembler☆41Updated last month
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- convert PAF format to CHAIN format☆33Updated 7 months ago
- Differential k-mer analysis☆39Updated last year