jfarek / alignstats
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
☆19Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for alignstats
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- SV genotyping with long reads☆40Updated last year
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Find Unique genomic Regions☆29Updated this week
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 7 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated last week
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Bayesian reconstruction of ancient DNA fragments☆25Updated 3 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- transposable element typing pipeline☆16Updated 8 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Statistics and analysis for variation graphs☆31Updated this week
- Scaffolding with Ultralong Reads☆14Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆33Updated last month
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 3 weeks ago
- ☆28Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- A long-read analysis toolbox for cancer and population genomics☆20Updated 8 months ago
- ☆26Updated 3 months ago
- Convert HAL to VG☆21Updated 3 months ago