jfarek / alignstatsLinks
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
☆19Updated last year
Alternatives and similar repositories for alignstats
Users that are interested in alignstats are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- ☆16Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆30Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 7 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- ☆35Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 8 months ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- ☆28Updated last year
- Convert HAL to VG☆23Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year
- A software for discovery, genotyping and characterization of structural variants☆22Updated last year
- Easy genomic regions for short-read variant calling☆45Updated 4 months ago
- ☆28Updated 9 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago