Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
☆20Dec 17, 2024Updated last year
Alternatives and similar repositories for alignstats
Users that are interested in alignstats are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- collection of data structures and algorithms☆19Mar 19, 2019Updated 7 years ago
- Quality control for phylogenetic analyses☆13Updated this week
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- Variant call verification☆19May 12, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NGS duplicate marking☆20Apr 6, 2021Updated 5 years ago
- Enabling differential allele-specific analysis☆12Sep 10, 2026Updated 3 weeks ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- ☆32Aug 2, 2022Updated 4 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Apr 20, 2022Updated 4 years ago
- libstrbuf: A powerful string library for C☆18Oct 15, 2016Updated 9 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Oct 1, 2026Updated last week
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Fast, efficient, lossless compression of fastq files☆14Jan 4, 2021Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 8 years ago
- A comprehensive and intelligent clinical phasing tool☆15Dec 3, 2022Updated 3 years ago
- ☆26Jul 1, 2026Updated 3 months ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- The BioGraph genomics analysis platform☆30Aug 22, 2023Updated 3 years ago
- ☆14May 12, 2023Updated 3 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A collection of utilities for working with next generation (MPS) sequencing data in Groovy☆15Sep 25, 2026Updated 2 weeks ago
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Apr 20, 2023Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 7 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- ☆16Apr 29, 2024Updated 2 years ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆20Feb 23, 2026Updated 7 months ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 3 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- verifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆111Sep 25, 2026Updated 2 weeks ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated 3 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago