TattaBio / gaia-benchmarkLinks
Benchmarking scripts for Gaia
☆12Updated 8 months ago
Alternatives and similar repositories for gaia-benchmark
Users that are interested in gaia-benchmark are comparing it to the libraries listed below
Sorting:
- ☆23Updated last month
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆28Updated 2 months ago
- ☆23Updated 2 years ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 3 months ago
- ☆46Updated last year
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 4 months ago
- Machine learning prediction of enzyme optimum pH☆48Updated 8 months ago
- Python package to manage protein structures and their annotations☆45Updated last year
- Fast protein domain structure embedding+search tool☆27Updated 3 months ago
- ☆21Updated 2 months ago
- ML toolset for creating TED: The Encyclopedia of Domains☆25Updated 7 months ago
- ☆18Updated 7 months ago
- ☆17Updated 2 years ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆77Updated 4 months ago
- A tool for protein and protein complex structure prediction.☆29Updated 6 months ago
- Detection of remote homology by comparison of protein language model representations☆60Updated last year
- One protein is all you need☆58Updated 2 weeks ago
- ☆31Updated last year
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago
- ☆27Updated 2 weeks ago
- Deep learning + physical modeling for 3D protein metal ion binding prediction☆13Updated 10 months ago
- ☆67Updated 5 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆43Updated 7 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆16Updated 11 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 9 months ago
- Protein Structure Archiver☆13Updated 3 months ago
- ☆25Updated 2 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- ☆20Updated last year
- 2D portraits of 3D protein structures☆27Updated 3 months ago