mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
☆20Oct 27, 2026Updated last week
Alternatives and similar repositories for mgikit
Users that are interested in mgikit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- fastq2bcl convert fastq files in a bcl2fastq-able run directory.☆12Oct 30, 2023Updated 3 years ago
- MGI sequence platform data multiplexing tool☆12Sep 11, 2019Updated 7 years ago
- Computational pipelines for processing of paired-end Illumina reads☆11Dec 11, 2023Updated 2 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆13Jan 21, 2021Updated 5 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Repository for reproducing figures and tables for the study titled, "Mapping spatial organization and genetic cell state regulators to ta…☆10Sep 5, 2024Updated 2 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 8 years ago
- Homology-based ANI estimation at unprecedented scales🦀☆27Oct 4, 2026Updated last month
- Multiplex PCR design, in silico☆25Mar 4, 2025Updated last year
- Python language bindings for bwa☆13Jul 19, 2026Updated 3 months ago
- Alignment-based gene expression quantification☆40Oct 1, 2026Updated last month
- Trim adapters from MGI sequence data☆14Jun 11, 2023Updated 3 years ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- ☆13Nov 20, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Native Rust reimplementation of the bwa-mem2 short-read aligner (byte-identical target, GPU planned). Work in progress. Not the official …☆24Updated this week
- Fast, self-contained VCF to MAF converter with embedded annotation (Rust rewrite of vcf2maf)☆26Oct 12, 2026Updated 3 weeks ago
- do some exercise☆15Dec 2, 2025Updated 11 months ago
- Fast, highly accurate, read-trimming for NGS data.☆26Oct 20, 2026Updated 2 weeks ago
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Oct 24, 2022Updated 4 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆19Jun 29, 2021Updated 5 years ago
- visualize CNV data from targeted capture based sequencing data☆37May 10, 2021Updated 5 years ago
- 🧬 Unique (& conserved) DNA sequence identification☆20Jun 4, 2026Updated 5 months ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 10 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- Single-Cell Spatial Explorer☆14Dec 14, 2023Updated 2 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆33Updated this week
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29May 15, 2026Updated 5 months ago
- ☆19Mar 14, 2022Updated 4 years ago
- Eukaryotic genome annotation software.☆37Oct 25, 2026Updated last week
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated 4 months ago
- Multiplex Primer Design☆21Oct 30, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- The Flexible Demultiplexer☆47Sep 15, 2026Updated last month
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆36Jun 30, 2021Updated 5 years ago
- RastQC - Combining FastQC, MultiQC, longread QC functionality for high-throughput sequencing data, written in Rust☆60Sep 24, 2026Updated last month
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Portable WDL workflows for CZ ID production pipelines☆53Apr 23, 2026Updated 6 months ago