mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
β18Feb 26, 2026Updated 2 months ago
Alternatives and similar repositories for mgikit
Users that are interested in mgikit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Open-source opinionated Galaxy-based framework for microbiota analysisβ13Jan 21, 2021Updated 5 years ago
- 𧬠Unique (& conserved) DNA sequence identificationβ18Mar 10, 2026Updated last month
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.β14Nov 29, 2013Updated 12 years ago
- Short reads aligner for NIPT/CNVβ16Oct 10, 2018Updated 7 years ago
- β12Nov 20, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Trim adapters from MGI sequence dataβ14Jun 11, 2023Updated 2 years ago
- Multiplex PCR design, in silicoβ20Mar 4, 2025Updated last year
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized fβ¦β14Apr 21, 2023Updated 3 years ago
- β10May 14, 2025Updated 11 months ago
- Official code repository for JAX-CNVβ14Jan 16, 2020Updated 6 years ago
- Single-Cell Spatial Explorerβ15Dec 14, 2023Updated 2 years ago
- β19Mar 14, 2022Updated 4 years ago
- Singular Genomics Demultiplexing Toolβ16Mar 5, 2024Updated 2 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic dataβ19Jun 29, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CADD-SV β a framework to score the effect of structural variantsβ18Updated this week
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGSβ17Mar 4, 2019Updated 7 years ago
- This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for singlβ¦β18Oct 12, 2021Updated 4 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.β10Mar 9, 2026Updated last month
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing dataβ12Apr 25, 2023Updated 3 years ago
- β11Jun 29, 2021Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purityβ18Oct 5, 2019Updated 6 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variantsβ35Dec 25, 2023Updated 2 years ago
- Calculate confidence scores from Kraken2 outputβ25Feb 18, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.β40Jun 6, 2023Updated 2 years ago
- Chimera: A Versatile Metagenomic Classification Toolβ21Feb 1, 2026Updated 3 months ago
- The python binding for D4 formatβ16Oct 22, 2021Updated 4 years ago
- β13Apr 22, 2021Updated 5 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.β15Dec 16, 2019Updated 6 years ago
- Open Human Genome Libraryβ66Dec 22, 2025Updated 4 months ago
- python module for querying the vicc knowledgebase integration datastoreβ11Jul 6, 2023Updated 2 years ago
- Identify differentially expressed k-mers between RNA-Seq datasetsβ11Mar 1, 2021Updated 5 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variantsβ19Mar 10, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- barcode demultiplexingβ22Jun 4, 2019Updated 6 years ago
- Fasten toolkit, for streaming operations on fastq filesβ82Oct 24, 2025Updated 6 months ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38β18Dec 16, 2025Updated 4 months ago
- MGI sequence platform data multiplexing toolβ12Sep 11, 2019Updated 6 years ago
- R API and htmlwidget for Vitessceβ45Aug 13, 2025Updated 8 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomesβ18Mar 5, 2019Updated 7 years ago
- Library and tool for annotating MAF files using Genome Nexus Webserver APIβ13Feb 25, 2026Updated 2 months ago