sagc-bioinformatics / mgikitLinks
mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
☆17Updated last month
Alternatives and similar repositories for mgikit
Users that are interested in mgikit are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated 3 weeks ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 2 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- ☆26Updated last year
- ☆34Updated 10 months ago
- fastx-utils using klib☆20Updated 5 years ago
- Long read to rMATS☆32Updated 2 years ago
- R package for DNA methylation analysis☆19Updated last year
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆38Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- A comprehensive toolkit for mutational signature analysis☆40Updated last year
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- ☆23Updated 10 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- ☆38Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 weeks ago
- Workflow for Sequenza, cellularity and ploidy☆22Updated 2 months ago
- DRAGEN Tumor/Normal workflow post-processing☆23Updated 2 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- ☆25Updated 6 months ago
- ☆18Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago