mklarqvist / djinnLinks
C++ library for analysing and storing large-scale cohorts of sequence variant data
☆17Updated 6 years ago
Alternatives and similar repositories for djinn
Users that are interested in djinn are comparing it to the libraries listed below
Sorting:
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆24Updated 3 weeks ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 5 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Pan gGnome Viewer☆10Updated 2 months ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- ☆28Updated 5 months ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Integrated Variant Caller☆17Updated 7 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- reference free variant assembly☆34Updated 2 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆21Updated 6 years ago
- ☆14Updated 2 years ago
- ☆24Updated 4 years ago
- ☆15Updated 7 years ago
- GBWT-based handle graph☆31Updated 2 months ago
- Detects human contamination in bam files☆16Updated 5 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago