mklarqvist / djinn
C++ library for analysing and storing large-scale cohorts of sequence variant data
☆17Updated 5 years ago
Alternatives and similar repositories for djinn:
Users that are interested in djinn are comparing it to the libraries listed below
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Indel-aware consensus for aligned BAM☆21Updated last month
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Pan gGnome Viewer☆10Updated last year
- ☆14Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆15Updated 4 years ago
- ☆16Updated 7 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- ☆25Updated 3 years ago
- ☆16Updated 2 weeks ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year
- Variant call adjudication☆16Updated 10 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 3 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago