mklarqvist / djinnLinks
C++ library for analysing and storing large-scale cohorts of sequence variant data
☆17Updated 6 years ago
Alternatives and similar repositories for djinn
Users that are interested in djinn are comparing it to the libraries listed below
Sorting:
- This repo is deprecated. Please use gfatools instead.☆16Updated 7 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- reference free variant assembly☆34Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 weeks ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- ☆16Updated 7 years ago
- ☆25Updated this week
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- ☆28Updated 4 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 5 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 3 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Pan gGnome Viewer☆10Updated last month
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago