polyactis / AccucopyLinks
Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data.
☆17Updated last year
Alternatives and similar repositories for Accucopy
Users that are interested in Accucopy are comparing it to the libraries listed below
Sorting:
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆14Updated 2 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Workflow for driver events identification across cohorts of tumours☆9Updated 10 months ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- DriverPower☆26Updated 4 months ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 3 months ago
- ☆16Updated 4 months ago
- Computes various SV statistics☆14Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- Two pass alignment for long reads☆22Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last week
- ☆12Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago