txje / c-minhash
Simple and fast MinHash implementation in C with Python wrapper
☆13Updated 4 years ago
Alternatives and similar repositories for c-minhash:
Users that are interested in c-minhash are comparing it to the libraries listed below
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- ☆18Updated 6 years ago
- dynamic-updateable-index☆11Updated 9 years ago
- ☆14Updated 9 years ago
- ☆12Updated last year
- comb aligner -- a graphical nucleotide sequence alignment tool☆9Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 7 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 5 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- Sequence Bloom Trees with All/Some split☆11Updated 6 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 4 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 10 months ago
- ☆10Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Implementation of a Backpack Quotient Filter☆11Updated 8 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- C++ library for parsing several formats in bioinformatics☆9Updated last year
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated this week
- ☆13Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆20Updated 4 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated 9 months ago
- A hash map using the BooPHF perfect hash function☆12Updated 8 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago