Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.
☆44Jul 28, 2021Updated 4 years ago
Alternatives and similar repositories for hmmcopy_utils
Users that are interested in hmmcopy_utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆208Mar 20, 2024Updated 2 years ago
- ☆77Jun 4, 2021Updated 4 years ago
- ☆26Aug 8, 2024Updated last year
- ASCAT R package☆199Feb 12, 2026Updated 2 months ago
- Open Human Genome Library☆66Dec 22, 2025Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆36Jul 28, 2019Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 5 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Jul 13, 2020Updated 5 years ago
- Profiling of transcription factor binding sites in cell-free DNA☆27Apr 9, 2020Updated 6 years ago
- WisecondorX — An evolved WISECONDOR☆114Apr 13, 2026Updated 3 weeks ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆18Dec 16, 2025Updated 4 months ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Nov 13, 2024Updated last year
- Resources for phage genomics and annotation☆10Oct 27, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- Visualization tool for temporal clonal evolution.☆18Mar 13, 2020Updated 6 years ago
- ☆16Jun 27, 2025Updated 10 months ago
- ☆32Mar 5, 2024Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated 2 months ago
- ☆10Nov 18, 2022Updated 3 years ago
- ☆12Nov 21, 2023Updated 2 years ago
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆446Aug 8, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 5 years ago
- Copy number calling and variant classification using targeted short read sequencing☆146Feb 19, 2026Updated 2 months ago
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Apr 16, 2026Updated 2 weeks ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆21Oct 25, 2023Updated 2 years ago
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆40Feb 8, 2026Updated 2 months ago
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆77Sep 12, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Lifterover copy number segments in whole☆24Feb 6, 2024Updated 2 years ago
- Listing of GPU based bioinformatics software & sites & publications☆12Jan 16, 2022Updated 4 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Sep 12, 2017Updated 8 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Jul 22, 2019Updated 6 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆19Jun 29, 2021Updated 4 years ago
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 10 months ago