shahcompbio / hmmcopy_utilsLinks
Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.
☆42Updated 4 years ago
Alternatives and similar repositories for hmmcopy_utils
Users that are interested in hmmcopy_utils are comparing it to the libraries listed below
Sorting:
- ☆49Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- ☆39Updated 4 years ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- ☆72Updated 2 years ago
- Genomic Association Tester☆35Updated 2 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- ☆53Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Tutorial Website☆60Updated 4 years ago
- ☆21Updated 3 weeks ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- Tools for analyzing DNA methylation data☆44Updated this week
- QDNAseq package for Bioconductor☆53Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- ☆31Updated last year
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- ☆13Updated 8 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- BISulfite-seq CUI Toolkit☆25Updated 2 weeks ago