shahcompbio / hmmcopy_utils

Related projects ⓘ

Alternatives and complementary repositories for hmmcopy_utils

• nloyfer / UXM_deconv
  ☆37Updated last year
• cancer-genomics / reproduce_lucas_wflow
  ☆25Updated 8 months ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆53Updated 3 years ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆26Updated 5 years ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆64Updated 5 years ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆44Updated last year
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated 8 months ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆53Updated last year
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆48Updated 3 months ago
• cphgeno / CNVbench
  Benchmarking of CNV calling tools
  ☆18Updated 5 years ago
• smithlabcode / dnmtools
  Tools for analyzing DNA methylation data
  ☆28Updated 2 weeks ago
• babelomics / SMAca
  SMN1 copy-number and sequence variant analysis from next generation sequencing data
  ☆21Updated last year
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆60Updated 5 years ago
• ChrisMaherLab / ClonEvol
  ☆13Updated 7 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆36Updated 2 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆40Updated 6 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆56Updated last year
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 4 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆32Updated 9 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• RahmanTeam / DECoN
  ☆50Updated last year
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆50Updated this week
• ENCODE-DCC / wgbs-pipeline
  ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
  ☆29Updated 2 years ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆50Updated last year
• ylab-hi / ScanExitron
  A computational workflow for exitron splicing identification
  ☆13Updated 2 months ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆31Updated 2 years ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆46Updated 5 years ago
• sklasfeld / DANPOS3
  Updated DANPOS2 to work with python3
  ☆20Updated 8 months ago
• Henikoff / Cut-and-Run
  ☆30Updated 6 years ago