lh3 / lv89
C implementation of the Landau-Vishkin algorithm
☆35Updated 2 years ago
Alternatives and similar repositories for lv89:
Users that are interested in lv89 are comparing it to the libraries listed below
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 8 months ago
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 4 months ago
- Efficient, parallel compression for terabyte-scale data☆39Updated last month
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated this week
- Tumour-only somatic mutation calling using long reads☆26Updated 3 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 3 months ago
- ☆28Updated last year
- Pan-Genomic Matching Statistics☆50Updated 10 months ago
- ☆64Updated 10 months ago
- 1-code framework: docs, C-library, and tools☆15Updated 3 weeks ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆49Updated this week
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆79Updated last week
- Optimized sequence graph implementations for graph genomics☆34Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 4 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 4 months ago
- Benchmarking pairwise aligners☆36Updated last week
- Efficient low-divergence mapping of long reads in minimizer space☆65Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆25Updated 2 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- Parallel Sequence to Graph Alignment☆35Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆37Updated this week
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year