lh3 / lv89Links
C implementation of the Landau-Vishkin algorithm
☆35Updated 3 years ago
Alternatives and similar repositories for lv89
Users that are interested in lv89 are comparing it to the libraries listed below
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Bidirectional WFA (Paper)☆48Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆70Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- Efficient, parallel compression for terabyte-scale data☆56Updated 3 months ago
- de Bruijn Graph-based read aligner☆35Updated 7 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 9 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago