☆18May 20, 2025Updated 10 months ago
Alternatives and similar repositories for DeepGene
Users that are interested in DeepGene are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SV genotyper for long reads with a variation graph☆16Aug 11, 2025Updated 7 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- ☆23Sep 9, 2025Updated 6 months ago
- a pipeline for running MD simulations in the presence of probe molecules for druggability assessment☆12Dec 10, 2025Updated 3 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆49Mar 2, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 5 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 3 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 4 months ago
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 8 months ago
- k-mers and the like☆22Mar 2, 2026Updated 3 weeks ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated last month
- Differential quantification of alternative splicing events on spliced pangenome graphs☆15Jan 30, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆29Aug 7, 2025Updated 7 months ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆27May 10, 2025Updated 10 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated last month
- implicit pangenome graph☆97Mar 13, 2026Updated last week
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 2 months ago
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 11 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- Targeted genotyper for complex polymorphic genes☆38Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆18Jan 12, 2026Updated 2 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆14Nov 28, 2019Updated 6 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine…☆37Mar 10, 2026Updated 2 weeks ago
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 11 months ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 3 years ago