Alternatives and similar repositories for DeepGene

Users that are interested in DeepGene are comparing it to the libraries listed below

• althonos / pymemesuite
  Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.
  ☆16Updated 8 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆31Updated 6 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 8 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆27Updated 2 weeks ago
• songlab-cal / CherryML
  Scalable Maximum Likelihood Estimation of Phylogenetic Models
  ☆20Updated 11 months ago
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆23Updated last year
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆37Updated last month
• GSLBiotech / clustal-omega
  Multiple sequence aligner for protein and DNA/RNA.
  ☆22Updated 8 years ago
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆30Updated this week
• macwiatrak / Bacformer
  Modeling whole bacterial genome as a sequence of proteins.
  ☆86Updated 3 weeks ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆86Updated 10 months ago
• TurakhiaLab / TWILIGHT
  High throughput tool for tall and wide multiple sequence alignment.
  ☆26Updated last month
• nf-core / proteinfamilies
  Generation and updating of protein families
  ☆22Updated last week
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 3 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆30Updated 10 months ago
• JoanaMPereira / GCsnap
  GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
  ☆34Updated last year
• JJAlmagro / TargetP-2.0
  Detecting Sequence Signals in Targeting Peptides Using Deep Learning
  ☆14Updated 6 years ago
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆16Updated 8 months ago
• rnajena / bertax
  Taxonomic classification of DNA sequences
  ☆57Updated last year
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆23Updated last month
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated last year
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆11Updated 11 months ago
• bhattlab / SmORFinder
  A command line tool to identify and annotate small proteins in microbial sequencing datasets.
  ☆25Updated 2 years ago
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆16Updated 5 years ago
• gagneurlab / SpeciesLM
  Species-aware DNA language models capture regulatory elements and their evolution
  ☆27Updated 2 years ago
• steineggerlab / Metabuli-App
  ☆36Updated last month
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆82Updated 2 months ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆20Updated last year
• burstein-lab / genomic-nlp
  ☆28Updated last year