☆19May 20, 2025Updated last year
Alternatives and similar repositories for DeepGene
Users that are interested in DeepGene are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated 2 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- ☆23Jun 27, 2026Updated last week
- a pipeline for running MD simulations in the presence of probe molecules for druggability assessment☆12Dec 10, 2025Updated 6 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆54Jun 10, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 28, 2026Updated 2 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆62May 17, 2026Updated last month
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28Jun 18, 2026Updated 2 weeks ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 2 months ago
- k-mers and the like☆23Updated this week
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 5 months ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆30Aug 7, 2025Updated 10 months ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆29Apr 24, 2026Updated 2 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆24Feb 16, 2026Updated 4 months ago
- implicit pangenome graph☆109Jun 17, 2026Updated 2 weeks ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 5 months ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- Targeted genotyper for complex polymorphic genes☆42Jun 27, 2026Updated last week
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- General purpose utility related to GAF files☆29May 20, 2026Updated last month
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 3 weeks ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆14Nov 28, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine…☆43Mar 10, 2026Updated 3 months ago
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆37Apr 23, 2025Updated last year
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆23May 16, 2026Updated last month
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago