☆18May 20, 2025Updated last year
Alternatives and similar repositories for DeepGene
Users that are interested in DeepGene are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SV genotyper for long reads with a variation graph☆16Sep 28, 2026Updated 2 weeks ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 11 months ago
- ☆23Sep 22, 2026Updated 3 weeks ago
- a pipeline for running MD simulations in the presence of probe molecules for druggability assessment☆12Dec 10, 2025Updated 10 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- COsine SImilarity-based Genotyper using pangenomes☆40Sep 24, 2026Updated 2 weeks ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 8 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆54Jun 10, 2026Updated 4 months ago
- k-mers and the like☆22Oct 4, 2026Updated last week
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 5 months ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆18Jan 30, 2025Updated last year
- ☆31Aug 18, 2026Updated last month
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated 2 weeks ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 8 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- De novo genome assembly for long reads using an overlap graph☆25Oct 5, 2026Updated last week
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- General purpose utility related to GAF files☆38Aug 6, 2026Updated 2 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated 2 years ago
- ☆27Jun 16, 2026Updated 3 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated last month
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Statistics and analysis for variation graphs☆55Dec 17, 2024Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆15Nov 28, 2019Updated 6 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 7 months ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆30Apr 24, 2026Updated 5 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Genome annotation pre-publication results☆41Updated this week
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- ☆19May 10, 2023Updated 3 years ago