Alternatives and similar repositories for raisd

Users that are interested in raisd are comparing it to the libraries listed below

• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆48Updated 3 months ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆48Updated 2 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated last year
• tsackton / linked-selection
  ☆24Updated 8 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆47Updated 2 months ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• harvardinformatics / degenotate
  ☆52Updated 3 months ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆27Updated 7 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆54Updated 3 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆22Updated last year
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆27Updated 7 years ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆59Updated 2 weeks ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆20Updated 4 months ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆37Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆62Updated 9 months ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆46Updated 3 years ago
• JiangYuLab / CNVcaller
  ☆42Updated last year
• jkimlab / PAPipe
  ☆36Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆51Updated 7 years ago
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 5 years ago
• LauritsSkov / Introgression-detection
  ☆43Updated 4 months ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago