R Package to Estimate Variable Recombination Rates using Population Genetic Data
☆45Nov 13, 2019Updated 6 years ago
Alternatives and similar repositories for LDJump
Users that are interested in LDJump are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Estimate recombination rates from population genetic data☆71Jun 10, 2020Updated 6 years ago
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 10 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆63Feb 10, 2026Updated 8 months ago
- ☆11Mar 4, 2025Updated last year
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆16Jun 12, 2020Updated 6 years ago
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Apr 1, 2021Updated 5 years ago
- Model-free inference of tree sequences from unphased genotypes☆13May 22, 2026Updated 5 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 7 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- Haplotype based scans for selection☆151Jun 5, 2026Updated 4 months ago
- Analysis of large inversions using SNP data☆10Jul 29, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 3 years ago
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 9 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆62Oct 23, 2026Updated last week
- predicting DFE and alpha from polymorphism data☆29Oct 4, 2018Updated 8 years ago
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- iLASH - IBD Estimation Using Locality Sensitive Hashing☆18Nov 6, 2025Updated 11 months ago
- A coalescent simulator for genome-scale sequences☆46Jan 2, 2024Updated 2 years ago
- Population genetics analyses from NGS data☆28Mar 8, 2021Updated 5 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Dec 30, 2023Updated 2 years ago
- General tools for genomic analyses.☆398Mar 25, 2026Updated 7 months ago
- Estimating evolutionary coevality☆11Jul 16, 2026Updated 3 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆211Jul 16, 2026Updated 3 months ago
- Tutorial about R package PopGenome☆44Mar 1, 2019Updated 7 years ago
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 4 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆170Sep 19, 2026Updated last month
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 8 years ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆27Sep 14, 2020Updated 6 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆14Mar 5, 2021Updated 5 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- Methods for examining PCA locally along the genome.☆91Aug 13, 2024Updated 2 years ago