Alternatives and similar repositories for biol610

Users that are interested in biol610 are comparing it to the libraries listed below

• jjberg2 / PolygenicAdaptationCode

  View on GitHub
  ☆20Sep 10, 2020Updated 5 years ago
• mturchin20 / bmass

  View on GitHub
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Sep 17, 2020Updated 5 years ago
• popsim-consortium / analysis

  View on GitHub
  Analysis of inference methods on standard population models
  ☆25Dec 3, 2021Updated 4 years ago
• mcveanlab / treeseq-inference

  View on GitHub
  Work for the tree sequence inference paper.
  ☆23Oct 19, 2020Updated 5 years ago
• malthesr / winsfs

  View on GitHub
  Site frequency spectrum estimation based on window expectation-maximisation algorithm
  ☆14May 19, 2023Updated 2 years ago
• ngs-docs / 2015-shell-genomics

  View on GitHub
  Lesson for the shell for genomics
  ☆10Jan 12, 2021Updated 5 years ago
• mathii / europe_selection

  View on GitHub
  Analysis scripts from the paper "Eight thousand years of natural selection in Europe".
  ☆11Nov 19, 2015Updated 10 years ago
• oeco28 / Cacao_Genomics

  View on GitHub
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆12Aug 31, 2018Updated 7 years ago
• DReichLab / adna

  View on GitHub
  Processing WGS aDNA data using the ReichLab protocol
  ☆13Mar 8, 2019Updated 6 years ago
• CMPG / signet

  View on GitHub
  An R package to detect selection in biological pathways
  ☆14Jan 19, 2024Updated 2 years ago
• owensgl / reformat

  View on GitHub
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Feb 21, 2025Updated 11 months ago
• molpopgen / fwdpy11

  View on GitHub
  Forward-time simulation in Python using fwdpp
  ☆31Feb 1, 2026Updated last week
• bwringe / hybriddetective

  View on GitHub
  ☆15Mar 20, 2023Updated 2 years ago
• ThomasTaus / poolSeq

  View on GitHub
  Analyze and simulate Pool-Seq time series data
  ☆17Jun 16, 2022Updated 3 years ago
• popsim-consortium / stdpopsim

  View on GitHub
  A library of standard population genetic models
  ☆139Updated this week
• NovembreLab / eems-around-the-world

  View on GitHub
  Repo to analyze population genetic data with many different methods
  ☆15Oct 23, 2019Updated 6 years ago
• gc5k / GEAR

  View on GitHub
  GEAR [GEnetic Analysis Repository], contact chenguobo@gmail.com;
  ☆21Dec 31, 2021Updated 4 years ago
• standard-aaron / palm

  View on GitHub
  Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
  ☆16Nov 13, 2020Updated 5 years ago
• timbeissinger / Maize-Teo-Scripts

  View on GitHub
  ☆17Dec 2, 2015Updated 10 years ago
• kr-colab / shIC

  View on GitHub
  The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps
  ☆14Feb 2, 2021Updated 5 years ago
• tskit-dev / tskit-rust

  View on GitHub
  Rust bindings for the tskit library
  ☆16Feb 1, 2026Updated last week
• weissmanlab / magic

  View on GitHub
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Aug 8, 2023Updated 2 years ago
• GLBRC / sppIDer

  View on GitHub
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Sep 13, 2019Updated 6 years ago
• andrewkern / popGenMachineLearningExamples

  View on GitHub
  simple examples of using supervised machine learning for population genetics inference
  ☆39Oct 26, 2017Updated 8 years ago
• pblischak / polyploid-genotyping

  View on GitHub
  SNP genotyping in polyploids
  ☆17Aug 12, 2020Updated 5 years ago
• stschiff / GAworkshop

  View on GitHub
  Genome Analysis Workshop (Jena 2016) material
  ☆18Mar 3, 2017Updated 8 years ago
• LohmuellerLab / fitdadi

  View on GitHub
  Tools for inference of the DFE with dadi
  ☆14Apr 16, 2021Updated 4 years ago
• SamueleSoraggi / HMMploidy

  View on GitHub
  A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
  ☆18Nov 29, 2022Updated 3 years ago
• ekg / hhga

  View on GitHub
  haplotypes genotypes and alleles example decision synthesizer
  ☆20Jun 13, 2019Updated 6 years ago
• MorrellLAB / sequence_handling

  View on GitHub
  A series of scripts to automate sequence workflows
  ☆19Jan 24, 2026Updated 3 weeks ago
• DReichLab / ADNA-Tools

  View on GitHub
  This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.
  ☆26Aug 15, 2025Updated 5 months ago
• kr-colab / discoal

  View on GitHub
  discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…
  ☆49Updated this week
• selfdecode / rd-imputation-accuracy

  View on GitHub
  Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …
  ☆23Feb 29, 2024Updated last year
• rvaser / ra

  View on GitHub
  This repository is deprecated, please use the link to the right.
  ☆23Dec 11, 2018Updated 7 years ago
• kr-colab / diploSHIC

  View on GitHub
  feature-based deep learning for the identification of selective sweeps
  ☆57Feb 7, 2026Updated last week
• ramachandran-lab / SWIFr

  View on GitHub
  Sweep Inference Framework (controlling for correlation)
  ☆28Jul 10, 2024Updated last year
• LynchLab / MAPGD

  View on GitHub
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆30Apr 1, 2021Updated 4 years ago
• tsackton / linked-selection

  View on GitHub
  ☆24Jun 9, 2017Updated 8 years ago
• harrispopgen / mushi

  View on GitHub
  [mu]tation [s]pectrum [h]istory [i]nference
  ☆27Jan 9, 2025Updated last year