grahamgower / genomatnn
Predicts adaptive introgression using a CNN trained on genotype matrices.
☆14Updated last year
Alternatives and similar repositories for genomatnn:
Users that are interested in genomatnn are comparing it to the libraries listed below
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆16Updated last year
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 3 months ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- ☆16Updated 2 years ago
- Deleterious mutation prediction pipeline☆13Updated last month
- ☆12Updated 5 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Updated 4 years ago
- Selection outlier scan with population branch statistic☆13Updated 10 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆26Updated 6 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Scripts and resources for the haploblocks manuscript☆15Updated 4 years ago
- ☆15Updated 3 years ago
- Software for detecting introgression using supervised machine learning☆18Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆12Updated 8 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 4 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆14Updated 2 weeks ago
- Joint inference of heterozygosity rates and runs of homozygosity☆11Updated 4 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆9Updated 3 months ago
- ☆24Updated 7 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated 2 years ago
- Sex assignment through coverage☆17Updated 10 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated last year
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- Script to help assessing the evolutionary history of a TE family☆15Updated 5 years ago