grahamgower / genomatnn
Predicts adaptive introgression using a CNN trained on genotype matrices.
☆15Updated last year
Alternatives and similar repositories for genomatnn:
Users that are interested in genomatnn are comparing it to the libraries listed below
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆16Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆16Updated 2 years ago
- Selection outlier scan with population branch statistic☆13Updated last year
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆15Updated 5 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 6 months ago
- ☆12Updated 5 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆12Updated 6 months ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- ☆24Updated 7 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 3 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 5 years ago
- ☆18Updated last year
- Toolkit for evolutionary analyses of linkage groups☆27Updated 8 months ago
- Deleterious mutation prediction pipeline☆13Updated 3 months ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Infer demographic history with the Moran model☆47Updated 3 weeks ago
- Software package for estimating fine-scale recombination rate.☆13Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- ☆16Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- ☆19Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated last month
- General purpose population genetics software☆12Updated 5 years ago
- ☆16Updated 2 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago