kr-colab / discoalLinks
discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples
☆50Updated this week
Alternatives and similar repositories for discoal
Users that are interested in discoal are comparing it to the libraries listed below
Sorting:
- feature-based deep learning for the identification of selective sweeps☆56Updated last month
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Estimate recombination rates from population genetic data☆66Updated 4 years ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆15Updated 4 years ago
- Short scripts for converting genetic data between formats.☆29Updated 2 years ago
- Methods for examining PCA locally along the genome.☆80Updated 9 months ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- R code to compute the Singleton Density Score (SDS)☆31Updated 8 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated 3 months ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- Scripts to calculate population genetics statistics☆55Updated 6 years ago
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Infer demographic history with the Moran model☆47Updated 3 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆46Updated 2 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆51Updated 2 months ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Tutorial about R package PopGenome☆41Updated 6 years ago
- ☆43Updated 2 months ago
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- ☆57Updated 2 years ago