kr-colab / discoal
discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples
☆50Updated 6 months ago
Alternatives and similar repositories for discoal:
Users that are interested in discoal are comparing it to the libraries listed below
- feature-based deep learning for the identification of selective sweeps☆55Updated last week
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆15Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Estimate recombination rates from population genetic data☆66Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Methods for examining PCA locally along the genome.☆78Updated 8 months ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Infer demographic history with the Moran model☆47Updated 2 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated this week
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- ☆24Updated 7 years ago
- Short scripts for converting genetic data between formats.☆29Updated 2 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆43Updated last month
- ☆28Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- Tutorial about R package PopGenome☆41Updated 6 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆58Updated 6 months ago
- Tutorial on using popular tools for learning about population history☆50Updated 6 years ago
- Scripts to calculate population genetics statistics☆55Updated 6 years ago
- R code to compute the Singleton Density Score (SDS)☆29Updated 8 years ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- ☆20Updated 4 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆21Updated 4 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year