kr-colab / discoal
discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples
☆48Updated 4 months ago
Alternatives and similar repositories for discoal:
Users that are interested in discoal are comparing it to the libraries listed below
- feature-based deep learning for the identification of selective sweeps☆51Updated 2 weeks ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated 10 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Pinpoints the mutation favored by selection☆33Updated 3 years ago
- ☆27Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 6 months ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 4 months ago
- ☆43Updated last year
- ☆24Updated 7 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- Infer demographic history with the Moran model☆47Updated 10 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆48Updated 2 weeks ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 3 months ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆34Updated last year
- ☆20Updated 4 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆29Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Updated 4 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆43Updated 5 years ago
- Demographic analysis of Brassica oleracea☆10Updated 3 months ago
- Estimate recombination rates from population genetic data☆63Updated 4 years ago
- Short scripts for converting genetic data between formats.☆29Updated 2 years ago