discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples
☆49May 2, 2026Updated this week
Alternatives and similar repositories for discoal
Users that are interested in discoal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated last month
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- Composite of Multiple Signals: tests for selection in meiotically recombinant populations☆14Jul 4, 2020Updated 5 years ago
- A library of standard population genetic models☆140Updated this week
- R code to compute the Singleton Density Score (SDS)☆31Sep 19, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated 2 years ago
- Simulate ARGs and genomic sequence data using population genetic models☆214Apr 15, 2026Updated 3 weeks ago
- Likelihood-based Selective Sweep Detection☆42Oct 12, 2023Updated 2 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Mar 27, 2026Updated last month
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated last month
- Haplotype based scans for selection☆146Updated this week
- ARG-based inference of selection using deep learning☆17Aug 31, 2023Updated 2 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Dec 11, 2022Updated 3 years ago
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- genotype dimensionality reduction with a VAE☆49Mar 11, 2025Updated last year
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Fast inference of fine-scale recombination rates based on fused-LASSO☆61Feb 10, 2026Updated 2 months ago
- ☆14Mar 7, 2021Updated 5 years ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 7 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆29Aug 21, 2018Updated 7 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 4 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Methods for examining PCA locally along the genome.☆88Aug 13, 2024Updated last year
- Large scale ancestry inference from PCA data☆23May 2, 2023Updated 3 years ago
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- ☆34Nov 11, 2025Updated 5 months ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆19Apr 9, 2025Updated last year
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- ☆13Apr 30, 2019Updated 7 years ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated last month
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆40Nov 15, 2023Updated 2 years ago
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 8 years ago