discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples
☆49May 26, 2026Updated last month
Alternatives and similar repositories for discoal
Users that are interested in discoal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated 3 months ago
- Composite of Multiple Signals: tests for selection in meiotically recombinant populations☆14Jul 4, 2020Updated 6 years ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- A library of standard population genetic models☆144Jun 17, 2026Updated last month
- R code to compute the Singleton Density Score (SDS)☆31Sep 19, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Detection and classification selective sweep use domain adaptive model☆11Apr 29, 2024Updated 2 years ago
- Simulate ARGs and genomic sequence data using population genetic models☆217Jun 30, 2026Updated 3 weeks ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated 3 months ago
- Likelihood-based Selective Sweep Detection☆42Oct 12, 2023Updated 2 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆64Feb 10, 2026Updated 5 months ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆69Mar 27, 2026Updated 3 months ago
- Haplotype based scans for selection☆149Jun 5, 2026Updated last month
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 8 years ago
- Pipeline to take VCF through to Selection Analysis.☆59Dec 11, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ARG-based inference of selection using deep learning☆18Aug 31, 2023Updated 2 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 4 years ago
- genotype dimensionality reduction with a VAE☆50Mar 11, 2025Updated last year
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 8 years ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- ☆14Mar 7, 2021Updated 5 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆29Aug 21, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆192Dec 19, 2024Updated last year
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 5 years ago
- SMC++ infers population history from whole-genome sequence data.☆177Jan 20, 2024Updated 2 years ago
- Methods for examining PCA locally along the genome.☆89Aug 13, 2024Updated last year
- Large scale ancestry inference from PCA data☆23May 2, 2023Updated 3 years ago
- ☆35Nov 11, 2025Updated 8 months ago
- A coalsecent simulator with selection☆22Dec 2, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- deep learning prediction of geographic location from individual genome sequences☆54Jan 20, 2025Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- ☆13Apr 30, 2019Updated 7 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago