Importing and manipulating Hi-C data in R
☆13Oct 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for HiCExperiment
Users that are interested in HiCExperiment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analyzing Hi-C data in R with HiCExperiment objects☆16Oct 6, 2026Updated 3 weeks ago
- Orchestrating Hi-C analysis with Bioconductor☆11Oct 7, 2026Updated 3 weeks ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆21Dec 18, 2022Updated 3 years ago
- Pipleline for deep centromeres analysis with CENdetectHOR☆11Aug 24, 2026Updated 2 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆14Mar 11, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Study of Multiple Sclerosis(MS) using paried snRNA-seq and Visium transcriptmics datasets.☆11Dec 11, 2024Updated last year
- Single-cell Hi-C & RNA analysis☆11Nov 20, 2024Updated last year
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated 2 years ago
- ☆21Jul 12, 2026Updated 3 months ago
- A suite of tools for machine learning with genomics data☆14May 25, 2026Updated 5 months ago
- Biological Data Science Workshops☆10Apr 22, 2022Updated 4 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆32Feb 21, 2023Updated 3 years ago
- ☆11Apr 4, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- Metagenomic binning based on Hi-C data☆30Updated this week
- Command line tool to plot genomic coverage from a BAM file☆14Apr 5, 2023Updated 3 years ago
- ☆26Oct 22, 2026Updated last week
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated 2 years ago
- ☆18Aug 14, 2024Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆42Sep 14, 2026Updated last month
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆27Updated this week
- A comprehensive C++ telomere annotation tool for genome assemblies and reads.☆18Oct 2, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Convert sequence IDs between ucsc/refseq/genbank☆16Aug 28, 2018Updated 8 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated 2 years ago
- Scripts used in the annotation of B10K genomes☆17Jun 1, 2020Updated 6 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆20Feb 28, 2022Updated 4 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆272Aug 24, 2026Updated 2 months ago
- Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model☆38Sep 25, 2026Updated last month
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆18Jun 2, 2026Updated 4 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆21Jul 13, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- A cross-platform method for chromatin contact normalization☆18Dec 29, 2025Updated 10 months ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆20Aug 12, 2025Updated last year
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- A cool place to store your Hi-C☆247Updated this week
- Python library for genome editing, CRISPR gRNA design and prediction☆22Dec 2, 2025Updated 10 months ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆25Dec 1, 2022Updated 3 years ago