fanagislab / EndHiCLinks
EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to assemble large contigs into chromosomal-level scaffolds.
☆24Updated 2 years ago
Alternatives and similar repositories for EndHiC
Users that are interested in EndHiC are comparing it to the libraries listed below
Sorting:
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 5 months ago
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- ☆28Updated 3 years ago
- ☆39Updated 3 months ago
- A pipeline for isoseq☆23Updated 7 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆58Updated 2 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆71Updated 4 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 months ago
- ☆31Updated 10 months ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆50Updated last year
- a software for annotating plant genes☆22Updated last year
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated 3 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- test repository☆29Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- ☆21Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- ☆18Updated 3 years ago
- ☆43Updated last year
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…☆14Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- read and analyse RepeatMasker output☆27Updated 2 years ago