fanagislab / EndHiCLinks
EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to assemble large contigs into chromosomal-level scaffolds.
☆23Updated 2 years ago
Alternatives and similar repositories for EndHiC
Users that are interested in EndHiC are comparing it to the libraries listed below
Sorting:
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated 2 months ago
- ☆28Updated 3 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- ☆30Updated 7 months ago
- ☆35Updated 2 weeks ago
- Yet another Hi-C scaffolding tool☆21Updated 9 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated this week
- ☆21Updated last year
- ☆28Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated 2 weeks ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆19Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 6 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆38Updated this week
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆29Updated last month
- ☆37Updated 8 months ago
- Multi-genome synteny block visualization tool☆42Updated 6 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 5 months ago
- Genome Annotation Pipeline☆36Updated 11 months ago
- ☆42Updated last year
- ☆31Updated 4 months ago
- Draw a dot plot from a paf alignment☆33Updated 4 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago