scoutzxb / CscoreToolLinks
☆21Updated 4 years ago
Alternatives and similar repositories for CscoreTool
Users that are interested in CscoreTool are comparing it to the libraries listed below
Sorting:
- ☆22Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- QC report generator for Hi-C pairs file☆12Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- An Optimized Nested TAD caller for Hi-C data☆22Updated 4 years ago
- Micro DNA identification☆24Updated 4 years ago
- Statistically Significant loops from HiChIP data☆44Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 9 years ago
- 4C-seq processing pipeline☆24Updated 4 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- ☆36Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆47Updated 2 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 3 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Updated 2 years ago
- single-nucleus nanopore reads processing pipeline☆16Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- A Python implementation for BH-FDR and HiCCUPS☆50Updated 3 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- ☆38Updated 4 years ago
- ☆12Updated 6 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A toolkit for analyzing architectural stripes☆20Updated 8 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year