scoutzxb / CscoreTool
☆20Updated 4 years ago
Alternatives and similar repositories for CscoreTool:
Users that are interested in CscoreTool are comparing it to the libraries listed below
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- ☆21Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- ☆36Updated 5 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆41Updated 2 years ago
- ☆21Updated 3 weeks ago
- QC report generator for Hi-C pairs file☆11Updated 4 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 6 months ago
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- ☆28Updated 3 months ago
- Statistically Significant loops from HiChIP data☆40Updated 11 months ago
- Genomic Association Tester☆30Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- ☆23Updated 3 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆20Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated last year
- ☆16Updated 4 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆28Updated 9 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago