data-fun / 3d-genome-builderLinks
3DGB is a workflow to build 3D models of genomes from HiC data
☆13Updated 3 months ago
Alternatives and similar repositories for 3d-genome-builder
Users that are interested in 3d-genome-builder are comparing it to the libraries listed below
Sorting:
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆20Updated 3 weeks ago
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Updated 5 months ago
- Distribution of TEs and their relationship to genes in host genome☆23Updated 2 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Updated 5 years ago
- defusion☆14Updated 4 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Updated last year
- Pan-3D genome analysis of soybean Hi-C data☆12Updated 2 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- Long Read Based SV Calling Tools Analysis☆14Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- ☆17Updated 5 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- ☆16Updated 6 years ago
- ☆20Updated last year
- ☆16Updated 2 years ago
- B73Ab10 genome assembly methods☆17Updated 3 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆14Updated last year
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Updated 5 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆23Updated 5 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- Construct and Analyze the North American Vitis pangenome☆26Updated 3 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated 2 months ago
- Code for TAD_SV project☆11Updated 3 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Whole Genome Annotation Pipeline☆16Updated 5 months ago
- ☆16Updated 3 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago