data-fun / 3d-genome-builderLinks
3DGB is a workflow to build 3D models of genomes from HiC data
☆13Updated this week
Alternatives and similar repositories for 3d-genome-builder
Users that are interested in 3d-genome-builder are comparing it to the libraries listed below
Sorting:
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Updated 2 years ago
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Updated 7 months ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆23Updated last month
- Distribution of TEs and their relationship to genes in host genome☆24Updated 2 years ago
- ☆14Updated 7 years ago
- Methylation analysis pipeline for genome graph☆14Updated 8 months ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- B73Ab10 genome assembly methods☆16Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Whole Genome Annotation Pipeline☆16Updated 7 months ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Updated 5 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- defusion☆14Updated 4 years ago
- ☆20Updated 2 weeks ago
- ☆17Updated 5 years ago
- Long Read Based SV Calling Tools Analysis☆14Updated last year
- ☆16Updated 2 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10Updated 8 months ago
- Repository for pipeline code☆26Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- ☆16Updated 2 years ago
- ☆16Updated 3 years ago
- ☆29Updated 2 years ago
- ☆16Updated 6 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Updated 12 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆30Updated last week
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 3 years ago