data-fun / 3d-genome-builderLinks
3DGB is a workflow to build 3D models of genomes from HiC data
☆13Updated 2 months ago
Alternatives and similar repositories for 3d-genome-builder
Users that are interested in 3d-genome-builder are comparing it to the libraries listed below
Sorting:
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆15Updated 10 months ago
- Distribution of TEs and their relationship to genes in host genome☆22Updated last year
- Pan-3D genome analysis of soybean Hi-C data☆11Updated 2 years ago
- ☆19Updated 2 years ago
- ☆14Updated 7 years ago
- ☆17Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- ☆13Updated 2 years ago
- ☆16Updated 4 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆14Updated last month
- Invertory of TE-gene isoforms☆11Updated last year
- Enabling differential allele-specific analysis☆11Updated 5 months ago
- ☆15Updated 5 years ago
- ☆12Updated this week
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆23Updated 6 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- ☆15Updated 3 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Updated 5 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- ☆19Updated 10 months ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- Preprocessing sequencing data for allele-specific analysis☆12Updated 2 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago
- ☆12Updated 5 years ago