genome basic statistics tool (e.g. n50, n10, ng50,...)
☆15Mar 5, 2012Updated 14 years ago
Alternatives and similar repositories for gnx-tools
Users that are interested in gnx-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)☆11Jan 19, 2022Updated 4 years ago
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 7 years ago
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆11Apr 28, 2026Updated 6 months ago
- Annotation Pipeline for NLR genes☆17Dec 6, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆18Oct 6, 2025Updated last year
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.☆10Apr 23, 2024Updated 2 years ago
- ☆14Oct 21, 2026Updated last week
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆15Nov 8, 2017Updated 8 years ago
- Annotation pipeline for plant genomes by PGSB☆11Nov 12, 2021Updated 4 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆21Jul 13, 2020Updated 6 years ago
- UVA Bioconnector Workshops☆14Jul 11, 2016Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A box of genomics tools☆24Jun 10, 2026Updated 4 months ago
- ☆15Feb 6, 2023Updated 3 years ago
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 6 years ago
- TGAC's Genome Browser☆11Oct 22, 2025Updated last year
- locally query the ncbi taxonomy☆39Dec 8, 2022Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated 3 weeks ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆44Oct 5, 2026Updated 3 weeks ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆85Feb 15, 2022Updated 4 years ago
- NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.☆14Nov 19, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Sep 6, 2026Updated last month
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- DART – a fast and accurate RNA-seq mapper with a divide-and-conquer strategy☆12Jun 4, 2020Updated 6 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Bax File Decoder and Data Compressor☆33Jan 3, 2024Updated 2 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆31Jun 26, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- HiCAT new project☆11Nov 23, 2023Updated 2 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 8 years ago
- Handling large files in git via symlinks☆10Mar 23, 2018Updated 8 years ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 9 years ago
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Jul 24, 2019Updated 7 years ago