mh11 / gnx-toolsLinks
genome basic statistics tool (e.g. n50, n10, ng50,...)
☆15Updated 13 years ago
Alternatives and similar repositories for gnx-tools
Users that are interested in gnx-tools are comparing it to the libraries listed below
Sorting:
- ☆31Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- new repo☆28Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago
- Command line tool to plot genomic coverage from a BAM file☆14Updated 2 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆17Updated last week
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- ☆31Updated 11 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Simple script to generate whole-genome coverage plots☆19Updated 10 years ago
- My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/☆8Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- Yet another Hi-C scaffolding tool☆21Updated 9 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- ☆35Updated last year
- ☆28Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Post Assembly Variants Finder☆18Updated 2 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- ☆51Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- A box of genomics tools☆21Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- ☆48Updated last year
- A scaffold assembling pipeline for stLFR reads.☆15Updated 4 years ago