mh11 / gnx-tools
genome basic statistics tool (e.g. n50, n10, ng50,...)
☆14Updated 12 years ago
Related projects ⓘ
Alternatives and complementary repositories for gnx-tools
- Command line tool to plot genomic coverage from a BAM file☆13Updated last year
- ☆31Updated 4 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- Scripts for NGS processing☆17Updated 7 years ago
- Yet another Hi-C scaffolding tool☆19Updated 2 weeks ago
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- B73Ab10 genome assembly methods☆16Updated 2 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆13Updated 3 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆20Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆32Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated 2 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 4 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆11Updated 6 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆9Updated 3 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago
- ☆15Updated 2 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- ☆25Updated 2 months ago
- methods for orphan gene prediction paper optimization☆25Updated 2 years ago
- ☆28Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Improved Phased Assembler☆28Updated 2 years ago