Alternatives and similar repositories for gnx-tools

Users that are interested in gnx-tools are comparing it to the libraries listed below

• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• vgteam / sv-genotyping-paper
  ☆31Updated 6 years ago
• Nextomics / nextsv
  ☆36Updated last year
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆21Updated 3 years ago
• matted-zz / genome_coverage_plotter
  Simple script to generate whole-genome coverage plots
  ☆19Updated 10 years ago
• farhangus / Sniffles2_plot
  ☆31Updated last year
• skoren / triobinningScripts
  Scripts to reproduce TrioBinning manuscript
  ☆17Updated 5 years ago
• cliu32 / Athlon
  Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
  ☆17Updated 7 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• timplab / nanopore-methylation-utilities
  ☆30Updated 4 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆24Updated 2 years ago
• csoderlund / SyMAP
  Synteny Mapping and Analysis Program
  ☆29Updated 2 weeks ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆21Updated last year
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆39Updated 2 years ago
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 4 years ago
• BGI-Qingdao / SLR-superscaffolder
  A scaffold assembling pipeline for stLFR reads.
  ☆14Updated 4 years ago
• mcfrith / tandem-genotypes
  ☆49Updated last year
• ruiguo-bio / replong
  source code of the paper "RepLong - de novo repeat discovery from long reads"
  ☆18Updated 10 months ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆17Updated 3 years ago
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 5 years ago
• ISUgenomics / SequelTools
  new repo
  ☆28Updated 4 years ago
• jason-weirather / AlignQC
  Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…
  ☆49Updated 7 years ago
• baoxingsong / GEAN
  This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.
  ☆45Updated 2 years ago
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆34Updated 7 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• cmdoret / tinycov
  Command line tool to plot genomic coverage from a BAM file
  ☆14Updated 2 years ago