XiaoTaoWang / EagleC
A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps
☆58Updated last year
Alternatives and similar repositories for EagleC:
Users that are interested in EagleC are comparing it to the libraries listed below
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆62Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆70Updated last year
- Genome-wide contact analysis using sklearn☆64Updated 11 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- ☆24Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆64Updated 4 months ago
- Micro-C QC and data analysis☆15Updated last year
- Lightweight converter between hic and cool contact matrices.☆68Updated 8 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆108Updated last month
- dcHiC: Differential compartment analysis for Hi-C datasets☆67Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- ☆36Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- A Python implementation for BH-FDR and HiCCUPS☆46Updated 4 months ago
- Docker for 4DN Hi-C processing pipeline☆59Updated 3 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆37Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆57Updated last year
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated 11 months ago
- HiC uniform processing pipeline☆60Updated last year
- An easy-to-use Hi-C data processing software supporting distributed computation.☆57Updated 7 months ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆45Updated last week
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆84Updated this week
- Tutorial Website☆57Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆63Updated 2 weeks ago