nservant / HiC-ProLinks
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
☆419Updated last year
Alternatives and similar repositories for HiC-Pro
Users that are interested in HiC-Pro are comparing it to the libraries listed below
Sorting:
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆456Updated 2 weeks ago
- parallel fastq-dump wrapper☆297Updated 2 years ago
- RNA-seq workflow using STAR and DESeq2☆344Updated this week
- Application for making ENCODE Blacklists☆320Updated 4 years ago
- Intro to ChIPseq using HPC☆311Updated 2 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆430Updated last month
- ATAC-seq peak-calling and QC analysis pipeline☆210Updated 2 months ago
- ENCODE ChIP-seq pipeline☆271Updated last year
- ☆274Updated 9 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆280Updated last year
- ENCODE ATAC-seq pipeline☆427Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated last month
- GTEx & TOPMed data production and analysis pipelines☆380Updated this week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆262Updated 7 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆220Updated last week
- A collection of tools for Hi-C data analysis☆606Updated last month
- Tools for handling Unique Molecular Identifiers in NGS data sets☆520Updated 2 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆267Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆258Updated 2 years ago
- Full-Length Alternative Isoform analysis of RNA☆234Updated 2 weeks ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆398Updated last month
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆377Updated 2 months ago
- Plot structural variant signals from many BAMs and CRAMs☆545Updated last year
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated last week
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆524Updated last week
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆451Updated last year
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆284Updated last year
- Strelka2 germline and somatic small variant caller☆381Updated 3 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆236Updated last week