nservant / HiC-ProLinks
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
☆429Updated last year
Alternatives and similar repositories for HiC-Pro
Users that are interested in HiC-Pro are comparing it to the libraries listed below
Sorting:
- Application for making ENCODE Blacklists☆332Updated 4 years ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆473Updated 4 months ago
- ENCODE ChIP-seq pipeline☆278Updated last year
- ATAC-seq peak-calling and QC analysis pipeline☆221Updated last month
- ☆286Updated 2 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆440Updated 5 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆263Updated 5 months ago
- parallel fastq-dump wrapper☆302Updated 2 years ago
- ENCODE ATAC-seq pipeline☆443Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆229Updated last month
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- A collection of tools for Hi-C data analysis☆628Updated 2 months ago
- Intro to ChIPseq using HPC☆320Updated 2 years ago
- GTEx & TOPMed data production and analysis pipelines☆392Updated 4 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆274Updated 2 months ago
- RNA-seq workflow using STAR and DESeq2☆351Updated 3 weeks ago
- Full-Length Alternative Isoform analysis of RNA☆246Updated last week
- SUPPA: Fast quantification of splicing and differential splicing☆292Updated 2 months ago
- Plot structural variant signals from many BAMs and CRAMs☆557Updated last year
- Tools for handling Unique Molecular Identifiers in NGS data sets☆534Updated 6 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268Updated 2 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆455Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆258Updated 3 months ago
- Strelka2 germline and somatic small variant caller☆389Updated 4 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆395Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆251Updated 2 weeks ago
- Documentation for the ANNOVAR software☆246Updated 5 months ago
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆500Updated 2 months ago