immunogenomics / scHLApersLinks
Code to run the scHLApers pipeline for personalized single-cell HLA quantification
☆17Updated last year
Alternatives and similar repositories for scHLApers
Users that are interested in scHLApers are comparing it to the libraries listed below
Sorting:
- ☆51Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- ☆38Updated 2 weeks ago
- ☆18Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- ☆32Updated 7 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆47Updated 8 months ago
- ☆39Updated 4 years ago
- ☆20Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆19Updated this week
- Network construction Algorithm☆22Updated last year
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- ☆17Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆54Updated 2 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18Updated 2 years ago
- ☆12Updated 6 years ago