Alternatives and similar repositories for scHLApers:

Users that are interested in scHLApers are comparing it to the libraries listed below

• gxiaolab / scAllele
  ☆33Updated 11 months ago
• UPSUTER / GEMLI
  ☆30Updated last month
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆21Updated 4 months ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆43Updated last year
• wenweixiong / MARVEL
  ☆45Updated 7 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆25Updated 5 months ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated last year
• lkmklsmn / MitoTrace
  ☆15Updated 9 months ago
• single-cell-genetics / singlecell_endodiff_paper
  Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
  ☆15Updated 8 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆29Updated 2 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆22Updated 2 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆23Updated 2 years ago
• gqi / DAESC
  ☆10Updated 8 months ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆14Updated 2 weeks ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆16Updated 2 years ago
• Morriseylab / scExtras
  ☆12Updated 8 months ago
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆16Updated last month
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆23Updated 3 years ago
• PoolLab / generecovery
  ☆29Updated last year
• One-Biosciences / MAYA
  ☆24Updated 7 months ago
• OSU-BMBL / scread-protocol
  ☆16Updated 2 years ago
• amf71 / cloneMap
  An R package to plot maps of clone distributions in somatic evolution
  ☆17Updated last year
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• single-cell-genetics / limix_qtl
  ☆20Updated 8 months ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 9 months ago
• kjgaulton / pipelines
  Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
  ☆26Updated 4 years ago
• nghiavtr / SCmut
  ☆31Updated 5 years ago
• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 2 years ago