immunogenomics / scHLApersLinks
Code to run the scHLApers pipeline for personalized single-cell HLA quantification
☆17Updated last year
Alternatives and similar repositories for scHLApers
Users that are interested in scHLApers are comparing it to the libraries listed below
Sorting:
- ☆39Updated 4 months ago
- ☆52Updated last year
- ☆32Updated 11 months ago
- ☆20Updated 2 years ago
- ☆18Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated last week
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 3 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 5 years ago
- Network construction Algorithm☆22Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆48Updated 11 months ago
- ☆12Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated 2 weeks ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- scWGCNA☆61Updated 3 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Updated last year
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ☆18Updated 2 years ago