hbliu / Open4GeneLinks
Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis
☆12Updated 3 months ago
Alternatives and similar repositories for Open4Gene
Users that are interested in Open4Gene are comparing it to the libraries listed below
Sorting:
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆20Updated 2 weeks ago
- ☆16Updated last week
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆18Updated last month
- Tissue-Gene Fine-Mapping☆25Updated 7 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 3 months ago
- Integration of TWAS and Colocalization Analysis☆17Updated last year
- GWAS genetics Fine-mapping method☆26Updated last year
- Create Regional Association Plots☆12Updated last month
- ☆13Updated last year
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆15Updated 3 weeks ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆17Updated last year
- Workflow for performing cistrome-wide associations studies☆10Updated 3 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆18Updated 4 years ago
- R package for generalized binary covariance decomposition.☆11Updated 3 months ago
- 🌓 Allele specific analyses across cell states and conditions☆10Updated 2 years ago
- ☆15Updated 2 years ago
- Estimate genetic correlation using predicted expression☆23Updated 7 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated 2 years ago
- ☆10Updated 5 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- ☆12Updated last year
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated 11 months ago
- ☆15Updated 4 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Updated 3 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated 2 years ago