hbliu / Open4GeneLinks
Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis
☆14Updated 4 months ago
Alternatives and similar repositories for Open4Gene
Users that are interested in Open4Gene are comparing it to the libraries listed below
Sorting:
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆21Updated last month
- ☆16Updated 3 weeks ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- GWAS genetics Fine-mapping method☆26Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆11Updated last year
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆56Updated 3 years ago
- Create Regional Association Plots☆12Updated 2 months ago
- Workflow for performing cistrome-wide associations studies☆10Updated 3 years ago
- ☆15Updated 2 years ago
- ☆17Updated 2 years ago
- Tissue-Gene Fine-Mapping☆26Updated 8 months ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆17Updated last year
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Updated 3 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Updated 2 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Updated 2 years ago
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 7 months ago
- ☆10Updated 6 months ago
- Multi-Omic Strategies for TWAS☆13Updated 2 years ago
- R package for generalized binary covariance decomposition.☆11Updated 4 months ago
- R package for tissue-specific gene enrichment☆15Updated 3 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated 11 months ago
- ☆27Updated 7 months ago
- Assessing enrichment of complex disease or trait associations among QTLs☆15Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- scripts for analyzing data of macrophage development in human☆10Updated 5 years ago
- Integration of TWAS and Colocalization Analysis☆17Updated last year
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆15Updated last month
- Code to reproduce analyses and figures for Kamath et al., 2022☆12Updated 3 years ago