EraslanBas / PerturbDecode
An end-to-end computational pipeline for large Perturb-seq screens
☆13Updated 2 weeks ago
Alternatives and similar repositories for PerturbDecode
Users that are interested in PerturbDecode are comparing it to the libraries listed below
Sorting:
- ☆18Updated 2 months ago
- ☆30Updated 3 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆16Updated 10 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 5 months ago
- Information-based dimensionality reduction☆29Updated 4 months ago
- cell type specific, trait-associated gene regulation☆25Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- ☆33Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆51Updated 2 years ago
- ☆29Updated 2 years ago
- scVI extension for unspliced RNA☆16Updated 3 months ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 6 months ago
- ☆49Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- ☆36Updated 7 months ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 8 months ago
- ☆13Updated last month
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆20Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated last month
- A method for analyzing scATAC-seq experiments.☆30Updated 2 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year