Alternatives and similar repositories for PerturbDecode:

Users that are interested in PerturbDecode are comparing it to the libraries listed below

• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆22Updated 11 months ago
• viannegao / ChromaFold
  ☆22Updated 3 months ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆48Updated 2 years ago
• wenweixiong / MARVEL
  ☆44Updated 5 months ago
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated last week
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆36Updated 2 weeks ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆25Updated 4 months ago
• UPSUTER / GEMLI
  ☆29Updated last week
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆25Updated 3 months ago
• ma-compbio / Fast-Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
  ☆18Updated last year
• Teichlab / sctk
  ☆33Updated 4 months ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆25Updated last year
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆18Updated 2 months ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated last month
• gxiaolab / scAllele
  ☆31Updated 9 months ago
• cellatlas / cellatlas
  ☆16Updated 6 months ago
• jacobhepkema / scover
  scover
  ☆22Updated last year
• PoolLab / generecovery
  ☆29Updated last year
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• Zhen-Miao / PICsnATAC
  Paired Insertion Counting for snATAC-seq data
  ☆17Updated 5 months ago
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆31Updated 3 years ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆12Updated 3 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆18Updated last month
• songlab-cal / scquint
  ☆15Updated 8 months ago
• immunogenomics / scHLApers
  Code to run the scHLApers pipeline for personalized single-cell HLA quantification
  ☆17Updated last year
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• lhe17 / nebula
  ☆35Updated 10 months ago
• veltenlab / mitoClone
  ☆12Updated 3 years ago