An end-to-end computational pipeline for large Perturb-seq screens
☆15Apr 25, 2025Updated last year
Alternatives and similar repositories for PerturbDecode
Users that are interested in PerturbDecode are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Apr 4, 2025Updated last year
- ☆17Mar 6, 2024Updated 2 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆37Sep 4, 2025Updated 7 months ago
- ☆29Oct 4, 2022Updated 3 years ago
- Matplotlib style for scientific publications☆14Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Jan 25, 2022Updated 4 years ago
- Repository detailing updated allowlisting and clonal analysis workflow☆10Feb 1, 2025Updated last year
- A tool for extracting and archiving Last.fm music listening data☆12Oct 11, 2024Updated last year
- Evaluation framework for computationally inferred gene networks from single-cell data.☆18Oct 23, 2025Updated 6 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆58May 30, 2022Updated 3 years ago
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- ☆10Jan 22, 2026Updated 3 months ago
- ☆12Aug 8, 2024Updated last year
- ☆11Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆34Oct 4, 2024Updated last year
- ☆13Oct 28, 2024Updated last year
- Metal and Water prediction☆13Feb 5, 2025Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 5 months ago
- COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R☆16Apr 19, 2026Updated last week
- R Interface to the Metabolights REST API☆11Aug 19, 2025Updated 8 months ago
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆13Mar 16, 2026Updated last month
- Meta-analysis of drug target evidence in single-cell data☆16Oct 22, 2024Updated last year
- ☆36Sep 25, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Swift Phenotypic Analysis of Cells☆10Jun 8, 2025Updated 10 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Nov 7, 2024Updated last year
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated 9 months ago
- ☆47Jan 28, 2026Updated 3 months ago
- Universal Single-Cell Genomics Preprocessing package☆49Feb 21, 2026Updated 2 months ago
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- machine-readable file format for genomic library sequence and structure☆129Apr 3, 2026Updated 3 weeks ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- InterLabelGO+: Unraveling label correlations in protein function prediction☆16Aug 5, 2025Updated 8 months ago
- ☆12Jun 28, 2024Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Simple scVI implementation☆12Mar 16, 2026Updated last month
- ☆13May 29, 2024Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆26Sep 23, 2025Updated 7 months ago
- R package IReNA☆30Nov 13, 2024Updated last year