EraslanBas / PerturbDecodeLinks
An end-to-end computational pipeline for large Perturb-seq screens
☆14Updated 6 months ago
Alternatives and similar repositories for PerturbDecode
Users that are interested in PerturbDecode are comparing it to the libraries listed below
Sorting:
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- ☆32Updated 9 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 10 months ago
- ☆51Updated last year
- ☆39Updated 2 months ago
- ☆32Updated 8 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- ☆29Updated 2 years ago
- R package IReNA☆28Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- Pipeline to run scE2G☆30Updated 3 weeks ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last week
- Functional Inference of Gene Regulation☆49Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 5 months ago
- cell type specific, trait-associated gene regulation☆29Updated 7 months ago
- scWGCNA☆61Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- The scripts used for the analyses in TOME project☆25Updated 11 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆41Updated 3 months ago
- ☆17Updated last year
- Information-based dimensionality reduction☆29Updated 11 months ago
- ☆39Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 4 months ago
- ☆29Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆11Updated 4 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- ☆20Updated last month