EraslanBas / PerturbDecodeLinks
An end-to-end computational pipeline for large Perturb-seq screens
☆14Updated 6 months ago
Alternatives and similar repositories for PerturbDecode
Users that are interested in PerturbDecode are comparing it to the libraries listed below
Sorting:
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- ☆32Updated 9 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 4 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- ☆39Updated last month
- ☆51Updated last year
- Pipeline to run scE2G☆29Updated last week
- ☆19Updated 5 months ago
- R package IReNA☆28Updated 11 months ago
- ☆17Updated last year
- ☆31Updated 7 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆30Updated 2 years ago
- Mapping pipeline for snmC-seq based technologies.☆21Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- scVI extension for unspliced RNA☆16Updated 5 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated this week
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- ☆29Updated 2 years ago
- cell type specific, trait-associated gene regulation☆29Updated 6 months ago
- Single-cell Iso Prep☆17Updated last year
- The scripts used for the analyses in TOME project☆25Updated 10 months ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated last week
- ☆41Updated 2 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago