Alternatives and similar repositories for PanGIAtlas:

Users that are interested in PanGIAtlas are comparing it to the libraries listed below

• Teichlab / SKM_ageing_atlas
  ☆12Updated 11 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆29Updated 2 years ago
• Lan-lab / sc-GC
  ☆30Updated 2 years ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆24Updated 2 weeks ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆31Updated 3 years ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆16Updated 2 years ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆18Updated 3 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆20Updated 2 years ago
• Chuxj / CRC-atlas
  ☆24Updated 9 months ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆42Updated this week
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• bio-Pixel / panVC
  ☆40Updated last year
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 3 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆60Updated 4 months ago
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆14Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆27Updated 2 weeks ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆19Updated last year
• aliceygao / pan-Fibroblast
  ☆37Updated 7 months ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆14Updated 7 months ago
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆13Updated 3 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆33Updated 4 years ago
• ruipwang / GastricTME
  ☆15Updated last year
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆21Updated 9 months ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• guangchunhan / LUAD_Code
  ☆14Updated last year
• yqq-chen / CRC_ICB
  ☆29Updated last year
• kaifuchenlab / MEBOCOST
  ☆15Updated 9 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago