Alternatives and similar repositories for PanGIAtlas

Users that are interested in PanGIAtlas are comparing it to the libraries listed below

• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• kaifuchenlab / MEBOCOST
  ☆25Updated last week
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 2 years ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆46Updated 3 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆14Updated 3 years ago
• Teichlab / HCA_Heart_ver2
  ☆37Updated 2 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆37Updated 4 years ago
• bio-Pixel / panVC
  ☆50Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆69Updated 9 months ago
• Lan-lab / sc-GC
  ☆31Updated 2 years ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆27Updated 2 years ago
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 4 months ago
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆22Updated last year
• aliceygao / pan-Fibroblast
  ☆44Updated 11 months ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆117Updated 10 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆30Updated last year
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆22Updated 3 years ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆41Updated 2 years ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆51Updated 3 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 7 months ago
• dpeerlab / pdac-progression
  ☆10Updated 2 years ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆64Updated 5 months ago
• youqiongye / CRC_scRNAseq
  ☆46Updated 3 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆22Updated last year
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆67Updated 2 years ago
• chloelulu / scMayoMap
  ☆22Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 4 months ago