Integration of gut cell atlases
☆40May 6, 2026Updated 3 months ago
Alternatives and similar repositories for PanGIAtlas
Users that are interested in PanGIAtlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆49Jan 28, 2026Updated 6 months ago
- Code for the spatial transcriptomic paper on IPF lungs☆24Jul 18, 2024Updated 2 years ago
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- ☆12Jun 11, 2023Updated 3 years ago
- ☆19Jan 11, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code used to process the data of the HBCA project☆33Feb 9, 2024Updated 2 years ago
- cell type specific, trait-associated gene regulation☆30Updated this week
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated 2 years ago
- ☆15Apr 11, 2024Updated 2 years ago
- ☆113Sep 16, 2020Updated 5 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 3 years ago
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution☆13Mar 1, 2023Updated 3 years ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ☆14Jan 24, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆94Jan 19, 2025Updated last year
- ☆13Jun 6, 2024Updated 2 years ago
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆14Jul 10, 2024Updated 2 years ago
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆69Jul 29, 2026Updated last week
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 3 years ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆23Apr 3, 2025Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated last month
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆53Nov 10, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code repository for TCAT analyses☆16Sep 26, 2025Updated 10 months ago
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated last month
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆17Sep 24, 2024Updated last year
- IPHOMED☆12Mar 30, 2026Updated 4 months ago
- ☆14Mar 17, 2026Updated 4 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆85Feb 17, 2025Updated last year
- Gene group activity utility functions for Scanpy☆113Dec 21, 2024Updated last year
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Reproducibility repository for the Human Neural Organoid Atlas publication☆51Dec 16, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- ☆40Jun 24, 2025Updated last year
- A tool for semi-automatic cell type harmonization and integration☆121Mar 9, 2026Updated 5 months ago
- ☆26Jan 9, 2024Updated 2 years ago
- These are scripts for pan-cacner B cells analyses.☆60Jul 22, 2024Updated 2 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆61Aug 21, 2023Updated 2 years ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year