yupenghe / encode_dna_dynamicsLinks
Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"
☆11Updated 5 years ago
Alternatives and similar repositories for encode_dna_dynamics
Users that are interested in encode_dna_dynamics are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated last month
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆16Updated 4 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆18Updated 5 years ago
- ☆11Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 5 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Updated 4 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆15Updated last year
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- ☆19Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Peak calling for 4C data☆13Updated 7 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 6 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆22Updated 3 months ago
- ☆17Updated 6 years ago
- ☆10Updated last year
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Updated last year
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- ChIA-PET Utilities☆13Updated 3 years ago
- ☆17Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- ☆12Updated 4 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆25Updated 3 years ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆16Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago