yupenghe / encode_dna_dynamicsLinks
Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"
☆11Updated 5 years ago
Alternatives and similar repositories for encode_dna_dynamics
Users that are interested in encode_dna_dynamics are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- ☆17Updated 6 years ago
- Peak calling for 4C data☆13Updated 7 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated last month
- ☆19Updated 5 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- GENome Organisation Visual Analytics☆15Updated 4 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Updated last year
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 5 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆11Updated 2 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 6 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Updated 6 years ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- ☆12Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆22Updated 4 months ago
- ☆10Updated last year
- ☆19Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 5 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆19Updated last year