Alternatives and similar repositories for post-GWAS-pipeline

Users that are interested in post-GWAS-pipeline are comparing it to the libraries listed below

• hakha-most / gwas_eqtl

  View on GitHub
  ☆18Oct 4, 2023Updated 2 years ago
• jinghuazhao / INF

  View on GitHub
  SCALLOP-INF analysis
  ☆20Oct 24, 2025Updated 3 months ago
• hakyimlab / gtex-gwas-analysis

  View on GitHub
  ☆24Aug 6, 2021Updated 4 years ago
• hakyimlab / PredictDB_Pipeline_GTEx_v7

  View on GitHub
  PredictDB Pipeline for GTEx v7 data
  ☆18Nov 9, 2022Updated 3 years ago
• RajLabMSSM / Fine_Mapping

  View on GitHub
  Fine mapping of genes associated with Parkinson's Disease using a variety of methods
  ☆11Mar 7, 2022Updated 3 years ago
• derekmichaelwright / gwaspr

  View on GitHub
  An R package for plotting GWAS results from the GAPIT package
  ☆14Oct 9, 2025Updated 4 months ago
• sinarueeger / GWAS.utils

  View on GitHub
  R package 📦 for handy functions when working with GWAS (summary) data
  ☆17Jul 29, 2019Updated 6 years ago
• roman-tremmel / ggfastman

  View on GitHub
  Fast manhattenplots using ggplot2
  ☆13Feb 19, 2024Updated last year
• liusihan / population-compare-pipeline

  View on GitHub
  Analysis pipelines for QTL discovery and GWAS signals interpretation
  ☆12Sep 3, 2024Updated last year
• bvoightlab / ColocQuiaL

  View on GitHub
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆21Aug 19, 2025Updated 5 months ago
• eskederks / eMAGMA-tutorial

  View on GitHub
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆72Feb 4, 2021Updated 5 years ago
• WSpiller / RMVMR

  View on GitHub
  A software package for performing and visualising radial multivariable Mendelian randomization analyses
  ☆12Nov 28, 2025Updated 2 months ago
• shuangsong0110 / LDER

  View on GitHub
  We design a method for heritability estimation, namely LD Eigenvalue Regression (LDER), which extends the LDSC method and provides more a…
  ☆13Aug 20, 2025Updated 5 months ago
• statgen / pheweb-rg-pipeline

  View on GitHub
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Mar 22, 2019Updated 6 years ago
• precimed / python_convert

  View on GitHub
  A collection of various utilities for GWAS summary statistics
  ☆32May 14, 2024Updated last year
• Joker-Jerome / UTMOST

  View on GitHub
  UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…
  ☆44Oct 23, 2025Updated 3 months ago
• yuanzhongshang / GIFT

  View on GitHub
  ☆21Nov 15, 2024Updated last year
• opain / TWAS-plotter

  View on GitHub
  R script to make Manhattan-style plot for TWAS
  ☆41Aug 15, 2021Updated 4 years ago
• RajLabMSSM / ggLocusZoom

  View on GitHub
  Create LocusZoom-style plots in R.
  ☆22Mar 5, 2023Updated 2 years ago
• jrs95 / geni.plots

  View on GitHub
  GENI plots to visualise results from genome-wide association studies
  ☆31Oct 14, 2024Updated last year
• swvanderlaan / MetaGWASToolKit

  View on GitHub
  A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
  ☆16Feb 9, 2026Updated last week
• juliedwhite / miamiplot

  View on GitHub
  An R package for creating ggplot2 based miami plots.
  ☆18Mar 7, 2025Updated 11 months ago
• ckhunsr1 / PUMICE

  View on GitHub
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Oct 6, 2023Updated 2 years ago
• smgogarten / GWASTools

  View on GitHub
  Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
  ☆18Mar 18, 2025Updated 10 months ago
• FinucaneLab / fine-mapping-inf

  View on GitHub
  Fine-mapping with infinitesimal effects
  ☆20May 27, 2025Updated 8 months ago
• MRCIEU / gwas2vcf

  View on GitHub
  Convert GWAS summary statistics to VCF
  ☆48Mar 11, 2023Updated 2 years ago
• jinghuazhao / TWAS-pipeline

  View on GitHub
  TWAS-pipeline
  ☆24Feb 21, 2021Updated 4 years ago
• gamazonlab / MR-JTI

  View on GitHub
  ☆57Jan 16, 2025Updated last year
• xiashen / MultiABEL

  View on GitHub
  Multi-Trait Genome-Wide Association Analysis
  ☆19Dec 19, 2023Updated 2 years ago
• pgxcentre / region-plot

  View on GitHub
  A tool to plot significant regions of GWAS
  ☆29Jan 27, 2023Updated 3 years ago
• jinghuazhao / pQTLtools

  View on GitHub
  https://jinghuazhao.github.io/pQTLtools/
  ☆23Mar 25, 2025Updated 10 months ago
• Jianhua-Wang / easyfinemap

  View on GitHub
  user-friendly pipeline for GWAS fine-mapping
  ☆12Mar 9, 2025Updated 11 months ago
• swvanderlaan / GWASToolKit

  View on GitHub
  A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
  ☆18Jan 21, 2026Updated 3 weeks ago
• huwenboshi / hess

  View on GitHub
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42May 2, 2018Updated 7 years ago
• wuyangf7 / OPERA

  View on GitHub
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆35Sep 26, 2024Updated last year
• FINNGEN / finemapping-pipeline

  View on GitHub
  Statistical fine-mapping pipeline in FinnGen
  ☆31Oct 3, 2025Updated 4 months ago
• jrs95 / gassocplot

  View on GitHub
  Regional association plots
  ☆26Apr 1, 2024Updated last year
• WenjianBI / POLMM

  View on GitHub
  Proportional Odds Logistic Mixed Model (POLMM) for ordinal categorical data analysis
  ☆11Aug 26, 2022Updated 3 years ago
• molgenis / 1M-cells

  View on GitHub
  This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…
  ☆12Jun 21, 2024Updated last year