Swarbricklab-code / BrCa_cell_atlasLinks
Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
☆120Updated last year
Alternatives and similar repositories for BrCa_cell_atlas
Users that are interested in BrCa_cell_atlas are comparing it to the libraries listed below
Sorting:
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆128Updated last year
- Mollecular Functional Portraits☆43Updated last year
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆97Updated 4 years ago
- The integration of single cell rank-based gene set enrichment analysis☆138Updated 4 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆53Updated 4 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆86Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 6 months ago
- ☆127Updated last year
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆79Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆83Updated 2 years ago
- Assessing the purity of single cell population☆136Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- ☆126Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆115Updated last week
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆62Updated 11 months ago
- ☆110Updated 5 years ago
- Codes used in pan-T cell analysis☆63Updated 2 years ago
- ☆47Updated 3 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 2 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated 8 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆147Updated 4 months ago
- ☆38Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆102Updated 5 months ago
- AUCell: score single cells with gene regulatory networks☆173Updated last year
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆152Updated 4 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆191Updated 2 weeks ago
- ☆44Updated 3 years ago