Swarbricklab-code / BrCa_cell_atlasLinks
Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
☆118Updated 11 months ago
Alternatives and similar repositories for BrCa_cell_atlas
Users that are interested in BrCa_cell_atlas are comparing it to the libraries listed below
Sorting:
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆125Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆131Updated 2 months ago
- Mollecular Functional Portraits☆43Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 4 months ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆85Updated 11 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆95Updated 4 years ago
- ☆108Updated 5 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆79Updated 10 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆51Updated 4 years ago
- ☆123Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆65Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆78Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated last year
- Assessing the purity of single cell population☆136Updated 3 years ago
- ☆125Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆139Updated 2 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆86Updated 6 months ago
- ☆47Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆167Updated last year
- scDIOR: Single cell data IO softwaRe☆146Updated 3 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆111Updated 2 weeks ago
- Codes used in pan-T cell analysis☆63Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆165Updated 5 months ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆150Updated 4 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆159Updated last month
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A tool for semi-automatic cell type harmonization and integration☆110Updated 5 months ago
- Single-cell disease relevance score (scDRS)☆152Updated 2 weeks ago