opain / eQTL_to_TWAS
Methods for converting eQTL summary statistics into TWAS SNP-weights
☆13Updated 9 months ago
Alternatives and similar repositories for eQTL_to_TWAS:
Users that are interested in eQTL_to_TWAS are comparing it to the libraries listed below
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- This is a pipeline for calculating weights for TWAS☆30Updated 2 years ago
- Create Regional Association Plots☆11Updated 6 months ago
- Integration of TWAS and Colocalization Analysis☆14Updated 3 months ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated last year
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆13Updated 2 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- An R package for creating ggplot2 based miami plots.☆16Updated 10 months ago
- ☆18Updated 11 months ago
- Estimate genetic correlation using predicted expression☆21Updated 6 years ago
- GWAS genetics Fine-mapping method☆21Updated 3 months ago
- A powerful TWAS framework leveraging summary-level reference data☆26Updated 2 weeks ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆16Updated 8 months ago
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆16Updated last month
- ☆18Updated 2 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆33Updated 4 months ago
- ☆8Updated last year
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆30Updated 5 months ago
- ☆14Updated 3 years ago
- ☆19Updated 3 weeks ago
- SCALLOP-INF analysis☆20Updated 4 months ago
- Regional association plots☆25Updated 9 months ago
- Fine-mapping with infinitesimal effects☆14Updated 10 months ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆16Updated 2 months ago
- MR-link 2 is a summary statistics _cis_ MR method that is pleiotropy robust.☆13Updated last month
- ☆11Updated 2 years ago
- GENI plots to visualise results from genome-wide association studies☆27Updated 3 months ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆14Updated 3 years ago
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆14Updated 6 months ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆20Updated this week