opain / eQTL_to_TWASLinks
Methods for converting eQTL summary statistics into TWAS SNP-weights
☆13Updated 5 months ago
Alternatives and similar repositories for eQTL_to_TWAS
Users that are interested in eQTL_to_TWAS are comparing it to the libraries listed below
Sorting:
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated 2 years ago
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated 2 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- Integration of TWAS and Colocalization Analysis☆17Updated last year
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Updated 3 years ago
- Create Regional Association Plots☆12Updated 3 months ago
- A powerful TWAS framework leveraging summary-level reference data☆31Updated 8 months ago
- ☆20Updated 2 months ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆22Updated last month
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 10 months ago
- Tissue-Gene Fine-Mapping☆26Updated 8 months ago
- ☆19Updated 4 months ago
- Estimate genetic correlation using predicted expression☆23Updated 7 years ago
- ☆15Updated 4 years ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Updated 4 months ago
- Workflow for performing cistrome-wide associations studies☆10Updated 3 years ago
- S-LDSC scripts for use on MR server.☆10Updated 4 years ago
- ☆21Updated 4 months ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Updated 5 months ago
- MR-link-2: pleiotropy robust cis MR☆21Updated 4 months ago
- 🌓 Allele specific analyses across cell states and conditions☆10Updated 3 years ago
- GWAS genetics Fine-mapping method☆26Updated last year
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated last year
- Fine-mapping method only using summary statistics☆20Updated 9 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Updated 4 years ago
- R script to make Manhattan-style plot for TWAS☆41Updated 4 years ago
- R script for generating functionally informed genetic risk scores from TWAS☆11Updated 2 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆36Updated 2 months ago
- An R package for creating ggplot2 based miami plots.☆18Updated 9 months ago