Alternatives and similar repositories for eQTL_to_TWAS

Users that are interested in eQTL_to_TWAS are comparing it to the libraries listed below

• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated 2 years ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 3 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated last year
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• mglev1n / mrSampleOverlap
  Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies
  ☆11Updated 3 years ago
• BennyStrobes / TGFM
  Tissue-Gene Fine-Mapping
  ☆26Updated 7 months ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated 2 months ago
• precimed / gsa-mixer
  ☆20Updated 2 months ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆23Updated 7 years ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆37Updated 9 months ago
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆31Updated 7 months ago
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆21Updated last month
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year
• adriaan-vd-graaf / mrlink2
  MR-link-2: pleiotropy robust cis MR
  ☆20Updated 3 months ago
• cuelee / pleio
  ☆19Updated 3 months ago
• RitchieLab / Gene-level-statistical-colocalization
  ☆15Updated 4 years ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• ghm17 / LOGODetect
  LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
  ☆28Updated 3 months ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 3 years ago
• BioPsyk / cleansumstats
  Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
  ☆21Updated 2 months ago
• Jianhua-Wang / easyfinemap
  user-friendly pipeline for GWAS fine-mapping
  ☆12Updated 8 months ago
• hakyimlab / scPrediXcan
  ☆34Updated last week
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆41Updated 4 years ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆18Updated 8 months ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆36Updated 2 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• RHReynolds / LDSCforRyten
  S-LDSC scripts for use on MR server.
  ☆10Updated 4 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆30Updated last week