single-cell-genetics / limix_qtlLinks
☆20Updated last year
Alternatives and similar repositories for limix_qtl
Users that are interested in limix_qtl are comparing it to the libraries listed below
Sorting:
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆23Updated 5 years ago
- ☆13Updated 11 months ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆30Updated 3 years ago
- Mediated Expression Score Regression (MESC)☆26Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- ☆11Updated 11 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- ☆18Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 3 months ago
- ☆34Updated last year
- ☆28Updated 2 weeks ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated 2 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- Pairwise Hierarchical Model☆18Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- A pipeline for scRNA-seq data analysis☆14Updated 3 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆24Updated 2 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- ☆18Updated last year
- Pan-transcriptomic phenotyping☆18Updated last week
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 2 months ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year