single-cell-genetics / limix_qtl
☆20Updated 8 months ago
Alternatives and similar repositories for limix_qtl:
Users that are interested in limix_qtl are comparing it to the libraries listed below
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆26Updated 3 years ago
- ☆18Updated 4 years ago
- ☆25Updated last month
- ☆10Updated 8 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 8 months ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆23Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ☆22Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- QTL Discovery using Annotations☆24Updated 2 years ago
- Pan-transcriptomic phenotyping☆15Updated 2 weeks ago
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago
- ☆12Updated 8 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆21Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last week
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Updated 8 months ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 3 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 9 months ago
- Colocalization analysis of genetic association signals☆51Updated 3 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated last year
- ☆33Updated 11 months ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated last year
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 4 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆44Updated last year
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago