Alternatives and similar repositories for limix_qtl

Users that are interested in limix_qtl are comparing it to the libraries listed below

• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated last year
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆30Updated 3 years ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆23Updated 5 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆25Updated 2 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆38Updated 3 years ago
• weizhou0 / qtl
  ☆28Updated last month
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 2 years ago
• hakyimlab / gtex-gwas-analysis
  ☆22Updated 3 years ago
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆18Updated 3 years ago
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆39Updated 3 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• gqi / DAESC
  ☆11Updated 11 months ago
• cozygene / TCA
  ☆18Updated 4 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• gxiaolab / scAllele
  ☆34Updated last year
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆18Updated 3 weeks ago
• single-cell-genetics / singlecell_endodiff_paper
  Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
  ☆15Updated 11 months ago
• LTLA / batchelor
  Clone of the Bioconductor repository for the batchelor package.
  ☆16Updated 2 months ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated 11 months ago
• immunogenomics / scHLApers
  Code to run the scHLApers pipeline for personalized single-cell HLA quantification
  ☆17Updated last year
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 3 years ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 2 months ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆36Updated last year
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆25Updated 2 years ago
• fsvarn / GLASSx
  GLASS consortium
  ☆13Updated 3 years ago
• Morriseylab / scExtras
  ☆13Updated 10 months ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated 11 months ago