jean-pierreBoth / gsearch
Approximate nearest neighbour search for microbial genomes based on hash metric
☆55Updated last week
Alternatives and similar repositories for gsearch:
Users that are interested in gsearch are comparing it to the libraries listed below
- Nail is an Alignment Inference tooL☆45Updated last week
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆56Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 9 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Recombination-free trees☆57Updated 2 weeks ago
- Split k-mer analysis – version 2☆81Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 3 weeks ago
- Efficient calculation of phylogenetic distance matrices.☆47Updated 6 months ago
- Graph-based assembly phasing☆76Updated 5 months ago
- Remove human reads from a sequencing run☆38Updated 6 months ago
- Pan-Genomic Matching Statistics☆52Updated last year
- Bacterial GWAS analysis☆39Updated last month
- Creating alignment plots from bam files☆56Updated this week
- Find Unique genomic Regions☆29Updated last week
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆56Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆34Updated 2 weeks ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆26Updated 3 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Differential k-mer analysis☆34Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆44Updated 10 months ago
- More scalable dereplication for metagenome assembled genomes☆49Updated 2 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆33Updated 4 months ago
- Bifrost graph gene caller.☆93Updated 6 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 11 months ago
- MIRA sequence assembler☆28Updated 3 months ago