Alternatives and similar repositories for probabilistic-collections-rs

Users that are interested in probabilistic-collections-rs are comparing it to the libraries listed below

• ratschlab / Project2020-seq-tensor-sketching
  ☆8Updated 3 years ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated last month
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated last year
• pjedge / rust-spoa
  Rust crate with bindings and interface to the SPOA library for generating consensus sequences.
  ☆12Updated 6 years ago
• RabbitBio / RabbitFX
  ☆11Updated 2 years ago
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆24Updated 2 months ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• COMBINE-lab / mazu
  A Rust library for building modular, fast and compact indexes over genomic data
  ☆13Updated last year
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• COMBINE-lab / pufferfish2
  ☆15Updated last year
• 38 / grass
  ☆22Updated 2 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆25Updated 2 months ago
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆30Updated this week
• jltsiren / simple-sds
  Simple succinct data structures (in Rust)
  ☆50Updated 7 months ago
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated 10 months ago
• Daniel-Liu-c0deb0t / simple-saca
  Hardware go brrr bounded context suffix array construction algorithm
  ☆18Updated last year
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 5 months ago
• COMBINE-lab / piscem-infer
  ☆14Updated last year
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆29Updated 2 weeks ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated 3 months ago
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆21Updated last week
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆17Updated 3 weeks ago
• natir / nuc2bit
  ☆14Updated 4 years ago
• bacpop / sketchlib.rust
  Fast sequence distance estimates
  ☆12Updated last week