jeffrey-xiao / probabilistic-collections-rs
☆15Updated 2 years ago
Alternatives and similar repositories for probabilistic-collections-rs:
Users that are interested in probabilistic-collections-rs are comparing it to the libraries listed below
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 7 months ago
- Hardware go brrr bounded context suffix array construction algorithm☆18Updated last year
- ☆8Updated 3 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated 8 months ago
- Singular Genomics Demultiplexing Tool☆16Updated 11 months ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Updated 5 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- A Rust library for building modular, fast and compact indexes over genomic data☆13Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 7 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Iterate over minimizers of a DNA sequence☆27Updated 7 months ago
- ☆13Updated 5 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 8 months ago
- Parallel Construction of Suffix Arrays in Rust☆22Updated this week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆23Updated this week
- ☆14Updated 4 years ago
- Benchmarking pairwise aligners☆36Updated last week
- Alignment-based gene expression quantification☆27Updated this week
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- ☆21Updated 2 years ago
- ☆25Updated 3 years ago
- Implementation of a Backpack Quotient Filter☆11Updated 6 months ago
- Rust implementation of ekg's dozyg☆9Updated 2 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆10Updated 5 months ago
- ☆15Updated last year
- ☆14Updated 11 months ago
- Implicit Interval Tree with Interpolation Index☆41Updated 2 years ago